PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa016348

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bHLH

Protein Properties

Length: 514aa MW: 56689 Da PI: 6.0111

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-20677	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27	8.4e-09	339	386	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Lsa016348 339 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 386 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.12E-10	333	390	No hit	No description
SuperFamily	SSF47459	4.84E-17	333	404	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	335	385	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.5E-17	335	403	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.0E-6	339	386	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-10	341	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MEKEKFFTNE GNGIPQAWNS IFGIGIQGSE LNCSSEQLPN CFFNPNCENS MDQRDIFESA 60 LSSIVSSPAN SHPGIPIPGG GNGGESIVLR ELIGRLGSIC NSGEISPQSR INGNNSTNNS 120 SYNTPLNSPP KLNLSITDHQ IHGSLPVLGN HQLPPAPFST DPGFVERAAR FSSFGGRSFA 180 LKENEFSHVM ESGKLSRSQF AGIPEENKKF SRLSMFSTQD NTDIGDSREE SSVSEQILGG 240 ETETETVMKG QSTSTNGRKR KGKGKETQSS TTTLPVKDDK VVAEAEKAES DAKRSKSDEE 300 EKEKEKEKEK TNENVNVKPP EPPKDYIHVR ARRGQATDSH SLAERVRREK ISERMKFLQD 360 LVPGCNKVTG KAVMLDEIIN YVQSLQRQVE FLSMKXATVN PRMDVSMEAF LSKDMFRSRV 420 PLQTNMTPFD ASTHQFPYGF QSQNAGIVLD GPDNQFSLNP LMAAMHRSSI MKPSHIDGFE 480 ASALWENDLQ SVVKMALGGQ DQPQSFHGQM KVEL

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MEKEKFFTNE GNGIPQAWNS IFGIGIQGSE LNCSSEQLPN CFFNPNCENS MDQRDIFESA  60
LSSIVSSPAN SHPGIPIPGG GNGGESIVLR ELIGRLGSIC NSGEISPQSR INGNNSTNNS  120
SYNTPLNSPP KLNLSITDHQ IHGSLPVLGN HQLPPAPFST DPGFVERAAR FSSFGGRSFA  180
LKENEFSHVM ESGKLSRSQF AGIPEENKKF SRLSMFSTQD NTDIGDSREE SSVSEQILGG  240
ETETETVMKG QSTSTNGRKR KGKGKETQSS TTTLPVKDDK VVAEAEKAES DAKRSKSDEE  300
EKEKEKEKEK TNENVNVKPP EPPKDYIHVR ARRGQATDSH SLAERVRREK ISERMKFLQD  360
LVPGCNKVTG KAVMLDEIIN YVQSLQRQVE FLSMKXATVN PRMDVSMEAF LSKDMFRSRV  420
PLQTNMTPFD ASTHQFPYGF QSQNAGIVLD GPDNQFSLNP LMAAMHRSSI MKPSHIDGFE  480
ASALWENDLQ SVVKMALGGQ DQPQSFHGQM KVEL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023736669.1	0.0	transcription factor bHLH62-like
TrEMBL	A0A2J6MJ59	0.0	A0A2J6MJ59_LACSA; Uncharacterized protein
STRING	POPTR_0002s23650.1	1e-179	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-64	bHLH family protein