PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa016447
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family CO-like
Protein Properties Length: 455aa    MW: 51094.3 Da    PI: 7.2202
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58688821PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-43230PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.69.2e-074273536
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg 36
               +C+ +++  + l+C+ ++  lC  C  + H+ 
  Lsa016447 42 VCDFCNQRSAVLYCKADSAKLCLFCDNAVHSA 73
               6***************************9954 PP
2zf-B_box223.3e-0783128342
   zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42 
                 ++C+++++  ++  C +++ llC +C    H g       H++vp+
  Lsa016447  83 SQICDNCGSDAVSVACSTDNLLLCTSCDHDFH-GdssvssyHSRVPV 128
                689******99*********************.55889999999886 PP
3CCT62.71.2e-21411453143
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                R +a+lRYkeK+ktR+++K irYesRKa+A++R+RvKGrFvk+
  Lsa016447 411 RCNAMLRYKEKKKTRRYDKCIRYESRKARADTRKRVKGRFVKS 453
                6789*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.7E-93885IPR000315B-box-type zinc finger
PROSITE profilePS501199.4564285IPR000315B-box-type zinc finger
CDDcd000215.63E-64273No hitNo description
PfamPF006433.5E-54280IPR000315B-box-type zinc finger
PROSITE profilePS501199.89781128IPR000315B-box-type zinc finger
CDDcd000212.14E-485128No hitNo description
SMARTSM003361.486128IPR000315B-box-type zinc finger
PfamPF062032.7E-15411453IPR010402CCT domain
PROSITE profilePS5101714.674411453IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
KSPICRFPNP PKIFITLYRF HHKFNLHHQY PKSFRDQIMS CVCDFCNQRS AVLYCKADSA  60
KLCLFCDNAV HSANALSLKH FRSQICDNCG SDAVSVACST DNLLLCTSCD HDFHGDSSVS  120
SYHSRVPVEE FSGCPSPLQL ASIWGFNLKS SGSNGNSCES KYSTTNFQDL ATIHEKTPCY  180
DEVPSVDWKS RGSGCGVHNK VLYKQLVELA KERFDGDGAE LGPQTPSGCG PRDISEGFEY  240
EEQDDKDLLH QQTPLTYLLM PPQNPANSKA NNGGITEFSN MWSYSPKRQT SQIWDFNLGR  300
SRSSEAGGDN LGFAINNCTD LVEDASFTTM EVLKEMDAIN ISFGTTSQNK QISGCISTME  360
SDNRAETQMM ETNRSNPTID GQMMEHFLAT NQGMEIPATT KVDPQQLAQN RCNAMLRYKE  420
KKKTRRYDKC IRYESRKARA DTRKRVKGRF VKSIE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023752452.10.0zinc finger protein CONSTANS-LIKE 14-like
TrEMBLA0A2J6M3B80.0A0A2J6M3B8_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.22e-82B-box type zinc finger protein with CCT domain