PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa016601
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family TALE
Protein Properties Length: 719aa    MW: 80137.8 Da    PI: 7.2212
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-9568PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.21.6e-095395712254
                SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                ++yps +++  LA+++gLt +qV++WF N R +
  Lsa016601 539 HPYPSDADKHMLATQTGLTRNQVSNWFINARVR 571
                89*****************************87 PP
2BELL102.92.2e-33395464372
       BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                 e ++kkakLl ++eeV++rYkqy++q+q+vissFe+vagl sa+pY+slAlk +SrhF  +k ai+eq+
  Lsa016601 395 PEFHQKKAKLLYMQEEVCRRYKQYNQQMQMVISSFETVAGLSSATPYVSLALKSVSRHFHFVKSAISEQL 464
                5889****************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.2E-44313462IPR006563POX domain
PfamPF075261.7E-41318461IPR006563POX domain
PROSITE profilePS5007111.872512575IPR001356Homeobox domain
CDDcd000861.01E-11515576No hitNo description
SMARTSM003898.4E-10515579IPR001356Homeobox domain
SuperFamilySSF466894.28E-17517581IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-28518579IPR009057Homeodomain-like
PfamPF059202.9E-18532571IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MEMNNLRTES HVAQKSRRHK LRFQQNSDDP NHQHLSQDPH FEVHRPRYGS ISYDPNVFPS  60
EMLNSVASNP QLLIPPNHAF VSHEQDSGSG SSPANFPHSV SSKVIGDNSQ NGANWKSVVA  120
SQNQLQVSSD WNVVSYSNVA SMSIDQSNSN SPMVVDGGAT SKSSYGFSHD LQNIHLGDQK  180
NYGQVPAFSS TPYYHNTLQE IVTSATVGTH VHQGKNFLEI NQPIPCWMNA SEQLGFIANR  240
SNDHREGTNE NNCITQGLSL SLSSVPQAKS EFPNLHSSPK PLKNDLLTNS DPKQLTGISS  300
FAHRNVGPLG PFTGYATILK NSKYLKPAQE LLNDNCDVGC HELVQACDNT HKILEEEMSR  360
VSTESGGSGA SSSTIYGSSE HISGRSSSLS ESYRPEFHQK KAKLLYMQEE VCRRYKQYNQ  420
QMQMVISSFE TVAGLSSATP YVSLALKSVS RHFHFVKSAI SEQLTQMKKT FEDLCSPTTG  480
TNDSLSQLKS IDHNSQRHGK SSGGSAIFGN QQPVWRPQRG LPERAVSVLK AWLFDHFLHP  540
YPSDADKHML ATQTGLTRNQ VSNWFINARV RIWKPMVEEI HTLETKGLVD SNTNTNNPPT  600
DDQDTSRMDM SSLTNKQQPE CSRNSGSLIM INGQNEPNGQ LWEHEKRSRP EFQIPQTTMD  660
RSFTNIMPYP RTTFEAGGVG PVSLTLGLRQ NAEHVQQLQQ HEHQLRQRFG GQLIHDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A5e-16521579563Homeobox protein Meis2
3k2a_B5e-16521579563Homeobox protein Meis2
4xrm_A7e-16521579563Homeobox protein Meis2
4xrm_B7e-16521579563Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023749449.10.0BEL1-like homeodomain protein 8
TrEMBLA0A2J6JGE30.0A0A2J6JGE3_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.18e-79BEL1-like homeodomain 8