PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa016626
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family WRKY
Protein Properties Length: 299aa    MW: 33111.5 Da    PI: 7.0006
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-720PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.32.8e-32152209259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp++v++tYeg+H h+
  Lsa016626 152 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSTDPTTVITTYEGQHCHH 209
                8******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-33136210IPR003657WRKY domain
SuperFamilySSF1182909.55E-28143209IPR003657WRKY domain
PROSITE profilePS5081129.964146211IPR003657WRKY domain
SMARTSM007744.6E-37151210IPR003657WRKY domain
PfamPF031064.6E-25152209IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDDDSSIDPL SGDSTWTLPG DYSFFGITDT RDNNILSEFG WNFHPPAPVL DRMDSGGSCG  60
VPEEINPTTS PVPVHSQVGS VENVRDVSMS NPLVSTSSSE DRPESSAASG DAASGGQPPS  120
SDTGGKVKKK GPKRIRQQRF AFMTKSEIDH LEDGYRWRKY GQKAVKNSPF PRSYYRCTNS  180
KCTVKKRVER SSTDPTTVIT TYEGQHCHHT VGFPRGLLNH ENAYSRLLAS HHSTTHQVIY  240
PRTPLPNLGT SKLQPKVESN EAADFNHRHS DEKPQESFQD SRLDHQGLLG DIVPTIMRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-26141208774Probable WRKY transcription factor 4
2lex_A3e-26141208774Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023754226.10.0probable WRKY transcription factor 57
TrEMBLA0A2U1NLE11e-123A0A2U1NLE1_ARTAN; DNA-binding WRKY
STRINGXP_009356380.15e-80(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.24e-59WRKY DNA-binding protein 57