PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa016647
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 137aa    MW: 14504.7 Da    PI: 5.1472
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58664555PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.98e-163483256
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
               +y G+r ++  g+Wv+eIr+p   +k+ r++lg++ t+e+Aa+a++ a+++l+ge
  Lsa016647 34 DYYGIR-CR-AGKWVSEIREP---NKSSRIWLGTYPTPEMAAAAYDVAALALKGE 83
               677887.55.7*********9...336*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.81E-143392No hitNo description
Gene3DG3DSA:3.30.730.108.1E-263492IPR001471AP2/ERF domain
PfamPF008471.5E-93483IPR001471AP2/ERF domain
SMARTSM003801.8E-243496IPR001471AP2/ERF domain
PROSITE profilePS5103218.7953490IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-183592IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
XRHHSSSAFQ LPVPQDDDNP PPTPGGSSSS RDPDYYGIRC RAGKWVSEIR EPNKSSRIWL  60
GTYPTPEMAA AAYDVAALAL KGEYAILNFP DSTLSTTFPE FPTADDIRAA AARAAAARAP  120
TKESGGGSST EIGTTLS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023754774.15e-95ethylene-responsive transcription factor ERF027-like
RefseqXP_023754775.15e-95ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ932e-26DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A2J6LYA11e-93A0A2J6LYA1_LACSA; Uncharacterized protein
STRINGVIT_16s0100g00400.t011e-31(Vitis vinifera)
STRINGXP_010278525.15e-32(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.14e-21ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]