PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa016716
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GATA
Protein Properties Length: 241aa    MW: 26441.8 Da    PI: 8.2994
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-6868PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA534.6e-17164198135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C++C +  Tp+WR gp g+ktLCnaCG++y++ +l
  Lsa016716 164 CTHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRL 198
                *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.229158194IPR000679Zinc finger, GATA-type
SMARTSM004011.2E-14158212IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.62E-14159221No hitNo description
Gene3DG3DSA:3.30.50.109.0E-14159195IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.17E-10163210No hitNo description
PfamPF003206.7E-15164198IPR000679Zinc finger, GATA-type
PROSITE patternPS003440164189IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDICQNIPVS GGLPTNYPPE QHLICSLDEL LSGHSMEEDD VNMEWLSIFV EDCLSSSGSC  60
MPPAAKPQST TSTAEGTNTS AEPQPKVNET YSISTHKILV PCKARSKRKR SQTCWSQQYL  120
NSLQPPCWLA ESELMIFPKK CTSPNSRGSG QEEGSSGQGQ GRKCTHCLSQ RTPQWRAGPL  180
GPKTLCNACG VRYKSGRLLP EYRPAKSPTF VSDKHSNSHR KVLEMRMSFL PSPSTNSSSS  240
S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103111ARSKRKRSQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023756790.11e-178GATA transcription factor 9-like
TrEMBLA0A2J6LTF51e-177A0A2J6LTF5_LACSA; Uncharacterized protein
STRINGXP_010257696.13e-70(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-43GATA transcription factor 9