PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa016738
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 251aa    MW: 28147.1 Da    PI: 8.2528
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58688649PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-37530PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.5e-1280126354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                ++h+ +ErrRR+riN  +++Lr l+P++      K++Ka+ L ++++ +k+L
  Lsa016738  80 KSHSDAERRRRERINAHLDTLRGLVPSN-----DKMDKATLLAEVIHQVKQL 126
                58*************************8.....7************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.2577126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-1080126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.18E-1180127No hitNo description
SuperFamilySSF474591.7E-1280128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-1281128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-1083132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.7E-5162211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDFYSPNHIF SNLESIVDDR FLGNLSGFNG DFENVDGLFS KSSQSLVLDE EKGELVKAQP  60
KVIGKKIGLI SEEKSLAALK SHSDAERRRR ERINAHLDTL RGLVPSNDKM DKATLLAEVI  120
HQVKQLKINA THASKGLLMP EDTDELKVEK LNNGGLVFHT SFCCKKRPEL LADVRRSLSS  180
LKVKIERAEL STLGDHVKMV FDFTKTSNGT MDEDIISSIH DAFTSVMEKG SISPEYSPRT  240
TLPNKRRRYS L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18590ERRRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023736955.10.0transcription factor bHLH30-like
TrEMBLA0A2J6MBZ10.0A0A2J6MBZ1_LACSA; Uncharacterized protein
STRINGXP_002522566.15e-71(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.14e-30bHLH family protein