PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa016944
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C2H2
Protein Properties Length: 590aa    MW: 64852.5 Da    PI: 9.4648
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58693526PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-46530PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-056890123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               + C+ C+k F r  nL+ H r H
  Lsa016944 68 FICEVCNKGFQREQNLQLHRRGH 90
               89*******************88 PP
2zf-C2H213.90.00017144166123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ykC++C+k +  +s+ k H +t+
  Lsa016944 144 YKCEKCSKKYAVQSDWKAHSKTC 166
                9******************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.6E-66790IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.04E-86790No hitNo description
PROSITE profilePS5015710.996890IPR007087Zinc finger, C2H2
SMARTSM003550.00526890IPR015880Zinc finger, C2H2-like
PfamPF121712.9E-56890IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SMARTSM00355140109139IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-5132165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.04E-8139164No hitNo description
SMARTSM0035575144164IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MAAASSSTSF YGARSDEEQH VSSIPTSSST IQSAAAQQKK KRSLPGTPNP DAEVIALSPK  60
TLMATNRFIC EVCNKGFQRE QNLQLHRRGH NLPWKLKQKS NKEVKRKVYL CPEPSCVHHD  120
PSRALGDLTG IKKHYSRKHG EKKYKCEKCS KKYAVQSDWK AHSKTCGTRE YRCDCGTLFS  180
RRDSFITHRA FCDALAQESA RHPSALGSIG SHLFGSHLSN SMNLGLSQLH DQNHQSSTTN  240
MLSLGNANFE QVMLPPSQTP LFPQSQQQQM ANSSSPFFLS DPNQGLNQVF DYDQQSQQHG  300
LMGNKPNIHG LMQLPDLHSN NTKITPNLFN LGFFSGNSNP TNGLKNSEND TQNNSNMSSS  360
GFMLPDHQFN TGGGSHDHMF LNSNNPHQES PMTPHMSATA LLQKAAQMGS TTSNNNATTL  420
LKSFGSSSTS TVGGDAKTHT GRQSLSATSF DVRGDQSLQS EMESDNQLQG LMNTLRSGGA  480
PSMFDGYGGN RNRNMNFGNM NEATKFNQNN FSLSVGNSNR TTLDFLGVGY SQRDQQQQQQ  540
QTQTQTQTQQ PQQQQQHHGR INISSLDPKM DSSSTQGSHA HGGSSKLQGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-33140204367Zinc finger protein JACKDAW
5b3h_F4e-33140204367Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023763510.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_023763512.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_023763513.10.0protein indeterminate-domain 5, chloroplastic-like
TrEMBLA0A2J6LEE80.0A0A2J6LEE8_LACSA; Uncharacterized protein
STRINGEOY011980.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-106indeterminate(ID)-domain 5