PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa016955
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 215aa    MW: 24133.4 Da    PI: 4.9074
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58679397PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.93e-19110160255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+++AeIrdp+ +g   r++lg+f++a eAa+a+++a+ +++g
  Lsa016955 110 RYRGVRQRP-WGKFAAEIRDPKRRG--SRVWLGTFDSAIEAAEAYDKAAFAMRG 160
                7********.**********96554..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-13110160IPR001471AP2/ERF domain
CDDcd000181.29E-28110168No hitNo description
Gene3DG3DSA:3.30.730.104.9E-32110169IPR001471AP2/ERF domain
SMARTSM003804.8E-37110174IPR001471AP2/ERF domain
PROSITE profilePS5103223.657110168IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-22110170IPR016177DNA-binding domain
PRINTSPR003671.4E-13111122IPR001471AP2/ERF domain
PRINTSPR003671.4E-13150170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MATPNEVAAL EFIRQHLLDE FESSPIDQIF TDFTYTPSFN SDDHCSISSS HCDSSSSTTS  60
PLSDFSNHSI DYDLTRTISF SETESTEHET TNPVSTKPVE RTAGGREERR YRGVRQRPWG  120
KFAAEIRDPK RRGSRVWLGT FDSAIEAAEA YDKAAFAMRG SKAILNFPLE VASLKKMDEY  180
GGGHKRDREH EVVVERNTIM AETAVDDPAT PSSNW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-28109173468ATERF1
3gcc_A1e-28109173468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9756931}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023756555.11e-159ethylene-responsive transcription factor 5-like
SwissprotQ8VZ912e-41EF103_ARATH; Ethylene-responsive transcription factor 6
TrEMBLA0A2J6LUD71e-158A0A2J6LUD7_LACSA; Uncharacterized protein
STRINGcassava4.1_012714m3e-42(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.13e-23ethylene responsive element binding factor 5