PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa016957
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 305aa    MW: 34091.1 Da    PI: 6.6266
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-14747PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.66.1e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +++ +v+ +G g+W++++++ g++R++k+c++rw +yl
        Lsa016957 15 KGPWTAEEDAKILAYVASHGIGNWTLVPQKAGLNRCGKSCRLRWTNYL 62
                     79********************************************97 PP
2Myb_DNA-binding49.21.2e-1570111346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++T+ E++l++++++  G++ W++Ia+ ++ gRt++++k++w++
        Lsa016957  70 SFTPHEEQLILRYHQAIGSR-WSLIAKQLP-GRTDNDVKNHWNT 111
                      79******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-25665IPR009057Homeodomain-like
PROSITE profilePS5129425.8911066IPR017930Myb domain
SuperFamilySSF466893.52E-3113109IPR009057Homeodomain-like
SMARTSM007178.8E-151464IPR001005SANT/Myb domain
PfamPF002495.1E-161562IPR001005SANT/Myb domain
CDDcd001671.30E-111762No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2466117IPR009057Homeodomain-like
PROSITE profilePS5129418.13767117IPR017930Myb domain
SMARTSM007174.5E-1467115IPR001005SANT/Myb domain
CDDcd001671.40E-1070113No hitNo description
PfamPF002497.9E-1470111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGRRPPCCDK SHVKKGPWTA EEDAKILAYV ASHGIGNWTL VPQKAGLNRC GKSCRLRWTN  60
YLRPDLKHDS FTPHEEQLIL RYHQAIGSRW SLIAKQLPGR TDNDVKNHWN TKLKKKLSKM  120
GIDPITHKPF GQLLSDYGNI NEIIPTTTPR PTTTTDHLHP EPLDFSHADS SLTIIDPFQD  180
QHHQLNLLTP PHFHINEAAS SSTSSPASKP PQVNLPSSPS IWSDYLIGDQ EQEYTNESDL  240
GIISGENTYS YNGSGSGSGL GLGVDPSKNI LDIPTNSISF VESILNRDRE MQLDFPPLFD  300
GYSEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30151177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for anther development and early tapetal function during microspore maturation (PubMed:18397379, PubMed:21957980). Regulates callose dissolution required for microspores release from the tetrads (PubMed:18397379). {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023753015.10.0LOW QUALITY PROTEIN: transcription factor MYB35-like
SwissprotQ9LSI79e-79MYB35_ARATH; Transcription factor MYB35
TrEMBLA0A2U1MZ141e-156A0A2U1MZ14_ARTAN; Duplicated homeodomain-like superfamily protein
STRINGVIT_14s0066g02180.t014e-95(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.11e-76MYB family protein
Publications ? help Back to Top
  1. Tsugama D, et al.
    A putative MYB35 ortholog is a candidate for the sex-determining genes in Asparagus officinalis.
    Sci Rep, 2017. 7: p. 41497
    [PMID:28176806]
  2. Lou Y, et al.
    Positive regulation of AMS by TDF1 and the formation of a TDF1-AMS complex are required for anther development in Arabidopsis thaliana.
    New Phytol., 2018. 217(1): p. 378-391
    [PMID:28940573]
  3. Li DD,Xue JS,Zhu J,Yang ZN
    Gene Regulatory Network for Tapetum Development in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 1559
    [PMID:28955355]