PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa016963

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

C2H2

Protein Properties

Length: 422aa MW: 46730.2 Da PI: 8.4879

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58692070	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	3.9e-05	186	209	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C +Cg++F + +L++H++ H Lsa016963 186 HPCLNCGEVFQKPGLLEQHQSIkH 209 78******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.787	186	210	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	188	209	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	5.18E-11	212	421	No hit	No description
Gene3D	G3DSA:3.90.228.10	2.2E-5	356	421	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MNLPYTLNLS XPLSIPFPSS ILFHGSAIAI SQSISALPPI TSHSGIGDSP LYGQYTSAFN 60 KLHLPPRHRT PPRLLHHLPH HPPPPPPPPP KTPRKASAPV PLLRVTSTKL KRHGCLSSFW 120 SFIKRVFSTK STSQVTDKKN SIHVHQIPSP ASSTRSISFI PPDAQSTTRP GSLTESDYLP 180 MRNEIHPCLN CGEVFQKPGL LEQHQSIKHA VCELLDDDPG KNIVQIIFTT GWPEKTPIIS 240 RIMKIHNTPK ILAQFEEYRE IVKSKAARPG DSRRRDERCI ADGNELLRFY CTTFLCDLGQ 300 NGNSSICVNQ YCNVCEIIGS GFSPKLDGIS TLSNSWRGHV AIPDDIEDEF GFMNVKRAMI 360 VCRVIAGRIG CDKGSGDKDD PGYDSLVGRE SGARQSRLEE EDELIVFNPR AVLPCFVIVY 420 TA

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MNLPYTLNLS XPLSIPFPSS ILFHGSAIAI SQSISALPPI TSHSGIGDSP LYGQYTSAFN  60
KLHLPPRHRT PPRLLHHLPH HPPPPPPPPP KTPRKASAPV PLLRVTSTKL KRHGCLSSFW  120
SFIKRVFSTK STSQVTDKKN SIHVHQIPSP ASSTRSISFI PPDAQSTTRP GSLTESDYLP  180
MRNEIHPCLN CGEVFQKPGL LEQHQSIKHA VCELLDDDPG KNIVQIIFTT GWPEKTPIIS  240
RIMKIHNTPK ILAQFEEYRE IVKSKAARPG DSRRRDERCI ADGNELLRFY CTTFLCDLGQ  300
NGNSSICVNQ YCNVCEIIGS GFSPKLDGIS TLSNSWRGHV AIPDDIEDEF GFMNVKRAMI  360
VCRVIAGRIG CDKGSGDKDD PGYDSLVGRE SGARQSRLEE EDELIVFNPR AVLPCFVIVY  420
TA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023764004.1	0.0	uncharacterized protein LOC111912503
TrEMBL	A0A2J6MFH9	0.0	A0A2J6MFH9_LACSA; Uncharacterized protein
STRING	cassava4.1_034451m	1e-135	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	1e-109	C2H2 family protein