PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa016967
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 944aa    MW: 107871 Da    PI: 8.897
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-37983PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.84.9e-08321366146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r +W+  Ed++l+  v+  G  +W  Ia  +g++Rt+ qc sr+q 
        Lsa016967 321 REPWSLTEDKKLLYTVQNRGLSNWIDIADALGTNRTPFQCLSRFQR 366
                      789*****************************************96 PP
2Myb_DNA-binding46.77.4e-15374418146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++ WT+ Ede l +av+++G  +W ++a+t+  gRt+ qc +rw k
        Lsa016967 374 KNEWTPPEDEELRNAVAEYGETNWQLVASTLE-GRTGTQCSNRWKK 418
                      679*****************************.***********98 PP
3Myb_DNA-binding47.34.8e-15428472247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g+W ++Ed+ l+ avk++G ++W++Iar ++ gRt  qc++rw + 
        Lsa016967 428 GKWAPDEDKHLKIAVKLFGAKNWNKIARFVP-GRTQVQCRERWVNC 472
                      79*****************************.***********986 PP
4Myb_DNA-binding41.72.6e-13480524248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      + WT+eEd++l++a+ ++G   W+++a++++  Rt+ qc  rw  +l
        Lsa016967 480 NEWTPEEDLKLKHAISEHGYL-WSKVAACVP-PRTDSQCLRRWKVLL 524
                      57*******************.*********.9**********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.27226317IPR001005SANT/Myb domain
PROSITE profilePS500906.562227315IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.3E-9229245IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-9288322IPR009057Homeodomain-like
SuperFamilySSF466892.37E-15299369IPR009057Homeodomain-like
PROSITE profilePS500909.036316368IPR017877Myb-like domain
SMARTSM007175.8E-4320370IPR001005SANT/Myb domain
PfamPF002491.4E-6321366IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-11323369IPR009057Homeodomain-like
SuperFamilySSF466895.96E-20354424IPR009057Homeodomain-like
PROSITE profilePS5129420.436369424IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-17370422IPR009057Homeodomain-like
SMARTSM007171.3E-13373422IPR001005SANT/Myb domain
PfamPF002497.3E-13374418IPR001005SANT/Myb domain
CDDcd001671.15E-10376420No hitNo description
SuperFamilySSF466891.07E-26425520IPR009057Homeodomain-like
PROSITE profilePS5129413.211426473IPR017930Myb domain
SMARTSM007176.4E-12426475IPR001005SANT/Myb domain
PfamPF002498.7E-14428472IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-18428476IPR009057Homeodomain-like
CDDcd001671.88E-10429471No hitNo description
PROSITE profilePS5129419.784474528IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-16477524IPR009057Homeodomain-like
SMARTSM007179.0E-13478526IPR001005SANT/Myb domain
PfamPF002493.2E-12480524IPR001005SANT/Myb domain
CDDcd001676.08E-11481524No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 944 aa     Download sequence    Send to blast
XGSLHEPCGL VEPKVPNTAA YSRIKKHLGS EFEGKDRNII IIIIIFASVF VHSKNNNKES  60
YVQRPEQIXV DGSNTNQNLE LSSNITPETP YANDSEGHEP GSEIIPAPDC GFPRSAQAFV  120
EAIKKNRICQ KFIRNKIGQI EARLEENKKL RERVKILKDF QVACRKKTGR ALSQKKDPRI  180
QLISVPKQRS NAAKDKETHA INQGPAENCH VADYRDAMSK YPFCLIREPW STEENENLLK  240
GIKQQFQEML TQNLFSGEDV DCHDMDNMLT EITHREISAE EIRSFLPKVN WERLASMYVI  300
ARSGPECQSR WMNSEDPLIN REPWSLTEDK KLLYTVQNRG LSNWIDIADA LGTNRTPFQC  360
LSRFQRSLNA SIIKNEWTPP EDEELRNAVA EYGETNWQLV ASTLEGRTGT QCSNRWKKSL  420
NPMRERVGKW APDEDKHLKI AVKLFGAKNW NKIARFVPGR TQVQCRERWV NCLDPALNMN  480
EWTPEEDLKL KHAISEHGYL WSKVAACVPP RTDSQCLRRW KVLLPHEVPM LQRARKMKKA  540
ALISNFVDRE HARPALTVND FVAPLLLESP PEPNQDHITS DNQNQRAVPR IRSRRARKVN  600
PTEKVLKLID EDEDDGDMKG NNNRISKRKQ SLSKNNPNIN ISSQESELSD LNVDGDNSEI  660
KKYARKQKRR GKREEKEMNM NILNDSQMCR ETPPIYIYEP EASPDMCMTE IESPEGEGEG  720
AITTITDNDN DNDIENKQNQ QMGLSMDPIN GAGSTPFKTK TATGKRKRKP RGNKEYEEDG  780
TFLNQKKTKR SHLSLPTENN KSNISSGEII NAQAHESHTW NQTQRRGNKK KNRNKQHDKS  840
DEAFEPLVAA ISDKKTNPNP NPNCNRGDIC SPSSTTEAPP IEKAPSNTTP RKRKMQEGDD  900
EEKIGNFFGR LKRRSCSKID DDEIGDEETI GSFFGKLKKK KRKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-262905204155MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-262905204155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1664672RKQKRRGKR
2829835KKNRNKQ
3937942KKKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023755153.10.0snRNA-activating protein complex subunit 4, partial
TrEMBLA0A2J6LXG40.0A0A2J6LXG4_LACSA; Uncharacterized protein
STRINGXP_010243797.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.21e-175myb domain protein 4r1