PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa017014

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

C2H2

Protein Properties

Length: 464aa MW: 51423.2 Da PI: 4.1994

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-35262	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00079	335	356	1	22
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 + C Cgk F++ + k+H ++ Lsa017014 335 FYCVVCGKKFKSDKQWKNHEQS 356 78*****************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.17E-14	326	377	No hit	No description
SMART	SM00451	4.6E-5	332	366	IPR003604	Zinc finger, U1-type
PROSITE profile	PS50157	9.037	335	364	IPR007087	Zinc finger, C2H2
Pfam	PF12171	2.5E-10	335	360	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	337	359	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MAPSSVPLSY QKTTPFQTPS NPPATPPPPR HLLDYCSIHG ATLLSLLVTP PSSSSSALRI 60 PDSPRRNRGF CRPETATESA LKDRSSEREX KPPMIAGAML SAWYPDTLAS DSSPARTKSN 120 AGNFPPKISL TAIAAAAALA ALEPRPLPRG RPFSRDRERP TDRMLSIFMT EMAAIPAQFQ 180 IGFLLSLLAE LPVPVISVIE TSPXVNLGVD FEGDIVSDPV DCATEKVKPR AEVGYGGGGD 240 DLTAVXNGFG FEICSDXIDC SGKTMGDEVG ICLKDXVVNG KEEGMVKKVD GDDKSPFLVA 300 ESVVVGEEPD WAKMEDSDEV VVEEEEEEDE RKNEFYCVVC GKKFKSDKQW KNHEQSKKHK 360 EKVAELREAF EEEEEEEEEE EVTENKDDLQ SEDIDDGGVI VDEVEELKEK FEEVIIEKEE 420 TAHDEEKDDD ENSLEAMLSW NKNKKKPKKK VYVEVEEEEV DLME

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MAPSSVPLSY QKTTPFQTPS NPPATPPPPR HLLDYCSIHG ATLLSLLVTP PSSSSSALRI  60
PDSPRRNRGF CRPETATESA LKDRSSEREX KPPMIAGAML SAWYPDTLAS DSSPARTKSN  120
AGNFPPKISL TAIAAAAALA ALEPRPLPRG RPFSRDRERP TDRMLSIFMT EMAAIPAQFQ  180
IGFLLSLLAE LPVPVISVIE TSPXVNLGVD FEGDIVSDPV DCATEKVKPR AEVGYGGGGD  240
DLTAVXNGFG FEICSDXIDC SGKTMGDEVG ICLKDXVVNG KEEGMVKKVD GDDKSPFLVA  300
ESVVVGEEPD WAKMEDSDEV VVEEEEEEDE RKNEFYCVVC GKKFKSDKQW KNHEQSKKHK  360
EKVAELREAF EEEEEEEEEE EVTENKDDLQ SEDIDDGGVI VDEVEELKEK FEEVIIEKEE  420
TAHDEEKDDD ENSLEAMLSW NKNKKKPKKK VYVEVEEEEV DLME

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74250.1	6e-17	DNAJ heat shock N-terminal domain-containing protein