PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa017158

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

BBR-BPC

Protein Properties

Length: 295aa MW: 32402.1 Da PI: 10.0298

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-19437	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	305.2	2.3e-93	1	295	1	301
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssia.erdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkllalll 86 mdddg + rn+gyyep+ +ke+lglqlms i rd+k+ re+ + +++++ + ++r ++ +rd +++ ++ll++l+ Lsa017158 1 MDDDGLNMRNWGYYEPS--FKEHLGLQLMSPIVdHRDTKPflssRENPI-IMNPNMTPYHRSsipseppipLHY-MRDGWIQR---------ERLLHMLP 87 9***99***99..*******88868*999666555.777777777777799999998888.9***99.........78999999 PP GAGA_bind 87 venslasalpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpi.eeaaeeakekkkkkkr....qrakkpkekkakkkkkksekskkkvkk 180 + + +++++t++ +s++++ ds+ e + e l+a+p +++ + ++kkr +++pk+++akk+kk + k Lsa017158 88 GNP--------SFSIIPDTSTSQSMHMMPPAPPPDSTKElGMNLEDLQAPPDgSDTGGDGGGGGSVKKRgagaTVSATPKQPRAKKPKK-----AASIPK 174 544........477899999999999955533333333333334444444430333333333333332200002334455555555555.....445556 PP GAGA_bind 181 esaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydls 280 e+ ++rsk+ k+++d+v+ng+++D+s++P+PvCsCtG+++qCY+WG+GGWqSaCCtttiS+yPLP+stkrrgaRiagrKmSqgafkk+LekL +e y+++ Lsa017158 175 ETGNQRSKSIKRNMDVVINGIDMDISGIPIPVCSCTGVPQQCYRWGAGGWQSACCTTTISMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLGSESYNFA 274 6656899***************************************************************************************** PP GAGA_bind 281 npvDLkdhWAkHGtnkfvtir 301 n++DL+ hWAkHGtnkfvtir Lsa017158 275 NAIDLRAHWAKHGTNKFVTIR 295 ******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.3E-145	1	295	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.8E-102	1	295	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MDDDGLNMRN WGYYEPSFKE HLGLQLMSPI VDHRDTKPFL SSRENPIIMN PNMTPYHRSS 60 IPSEPPIPLH YMRDGWIQRE RLLHMLPGNP SFSIIPDTST SQSMHMMPPA PPPDSTKELG 120 MNLEDLQAPP DGSDTGGDGG GGGSVKKRGA GATVSATPKQ PRAKKPKKAA SIPKETGNQR 180 SKSIKRNMDV VINGIDMDIS GIPIPVCSCT GVPQQCYRWG AGGWQSACCT TTISMYPLPM 240 STKRRGARIA GRKMSQGAFK KVLEKLGSES YNFANAIDLR AHWAKHGTNK FVTIR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269\|PubMed:14731261, ECO:0000269\|PubMed:15722463}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023763094.1	0.0	protein BASIC PENTACYSTEINE2-like
Swissprot	Q9SKD0	4e-90	BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBL	A0A2J6LFC6	0.0	A0A2J6LFC6_LACSA; Uncharacterized protein
STRING	XP_009608500.1	1e-122	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	7e-89	basic pentacysteine 2