PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa017165

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Trihelix

Protein Properties

Length: 422aa MW: 47655 Da PI: 6.1334

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58688930	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-12474	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.7	3.7e-24	96	200	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 +Wt+++v++Li ++ +++++ ++++ +kk++W++vs++m+ergf +sp+qC++k+++lnkryk+++++ +k+ +++++++ ++ Lsa017165 96 KWTDNMVRLLIMVVFYIGDEGGSEQpsgsdtaakkkgggggvlQKKGKWKSVSRAMMERGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACKVVENQSL 195 7************999999987667788899999999**********************************************55***** PP trihelix 82 fdqle 86 ++ ++ Lsa017165 196 LETMD 200 998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.4E-21	94	226	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
METNGMFSNT SGGSGMLGLE MSLNHQQNPN FLHQQPPFAA AAAAKQGYPY AAPKQRASPI 60 SDEEEPHSNN LNNPSTTEDS GGDGKLRKGS PWQRMKWTDN MVRLLIMVVF YIGDEGGSEQ 120 PSGSDTAAKK KGGGGGVLQK KGKWKSVSRA MMERGFYVSP QQCEDKFNDL NKRYKRVNDI 180 LGKGTACKVV ENQSLLETMD HLSAKLKEEA KKLLNSKHLF FREMCAYHNS CGGGSGGSGA 240 AHHSSPPEVT TTEQPPHHRQ NCVHSNNEDE EDDDEGEDDE DDGDGHPDEE EDDGLSSRKR 300 GRTAENDGHD GIIQQFNGEI SCVMQDLAKS VWEKRQWMKV KMMQLEEQRV GFQGQSYELE 360 KQRLKWVKFS CKKEREMEVE KLRNERMKLE NERMVLLLRQ KEMELVDLQH QYSSNLHKRT 420 TD

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

METNGMFSNT SGGSGMLGLE MSLNHQQNPN FLHQQPPFAA AAAAKQGYPY AAPKQRASPI  60
SDEEEPHSNN LNNPSTTEDS GGDGKLRKGS PWQRMKWTDN MVRLLIMVVF YIGDEGGSEQ  120
PSGSDTAAKK KGGGGGVLQK KGKWKSVSRA MMERGFYVSP QQCEDKFNDL NKRYKRVNDI  180
LGKGTACKVV ENQSLLETMD HLSAKLKEEA KKLLNSKHLF FREMCAYHNS CGGGSGGSGA  240
AHHSSPPEVT TTEQPPHHRQ NCVHSNNEDE EDDDEGEDDE DDGDGHPDEE EDDGLSSRKR  300
GRTAENDGHD GIIQQFNGEI SCVMQDLAKS VWEKRQWMKV KMMQLEEQRV GFQGQSYELE  360
KQRLKWVKFS CKKEREMEVE KLRNERMKLE NERMVLLLRQ KEMELVDLQH QYSSNLHKRT  420
TD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023758073.1	0.0	uncharacterized protein LOC111906557
TrEMBL	A0A2J6LR20	0.0	A0A2J6LR20_LACSA; Uncharacterized protein
STRING	EOY08079	1e-142	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	1e-90	sequence-specific DNA binding transcription factors