PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa017266

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

MYB_related

Protein Properties

Length: 345aa MW: 37495.3 Da PI: 9.1707

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58686379	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-37207	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44	5.1e-14	93	137	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++lG+g+W+ Iar + Rt+ q+ s+ qky Lsa017266 93 PWTEEEHRLFLLGLQKLGKGDWRGIARNYVLSRTPTQVASHAQKY 137 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	20.074	86	142	IPR017930	Myb domain
SuperFamily	SSF46689	3.09E-16	88	141	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.8E-18	89	141	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	1.4E-11	90	136	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-11	90	140	IPR001005	SANT/Myb domain
CDD	cd00167	5.03E-10	93	138	No hit	No description
Pfam	PF00249	3.0E-11	93	137	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MTRRCSHCSN NGHNSRTCPS RGGGVKLFGV RLTDGSIMKK SASMGNLSAL YHSSSPAAVS 60 PNPSSPATSD PVEGYLSDDP SAKRRADRKK GTPWTEEEHR LFLLGLQKLG KGDWRGIARN 120 YVLSRTPTQV ASHAQKYFIR QCSATRRKRR SSLFDMAPDT AAAEPPEDHF MLPPAAATAT 180 ATDHAENSKC SLKLSLKPDS DQSMEMKHEM KEEESSATAT ANVTVTGSEL PPIIPAFYPA 240 YIPVPFPVWP STMTPVEEGN GKGGGANESH HRVVKPIPIL QKEPLNLDEL VGMSSQLTLK 300 ETADHHHHME PSPLTLKLLA EPSRQSAFHA SSGVNKRDGN AFRAV

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MTRRCSHCSN NGHNSRTCPS RGGGVKLFGV RLTDGSIMKK SASMGNLSAL YHSSSPAAVS  60
PNPSSPATSD PVEGYLSDDP SAKRRADRKK GTPWTEEEHR LFLLGLQKLG KGDWRGIARN  120
YVLSRTPTQV ASHAQKYFIR QCSATRRKRR SSLFDMAPDT AAAEPPEDHF MLPPAAATAT  180
ATDHAENSKC SLKLSLKPDS DQSMEMKHEM KEEESSATAT ANVTVTGSEL PPIIPAFYPA  240
YIPVPFPVWP STMTPVEEGN GKGGGANESH HRVVKPIPIL QKEPLNLDEL VGMSSQLTLK  300
ETADHHHHME PSPLTLKLLA EPSRQSAFHA SSGVNKRDGN AFRAV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023729377.1	0.0	transcription factor MYBS3
TrEMBL	A0A2J6KQD1	0.0	A0A2J6KQD1_LACSA; Uncharacterized protein
STRING	evm.model.supercontig_2092.1	1e-128	(Carica papaya)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	1e-52	MYB_related family protein