PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa017402
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family WRKY
Protein Properties Length: 272aa    MW: 29892.8 Da    PI: 10.6055
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-1463PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.81.1e-23198256259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 D y+W+KYG K+++g +fpr YY+C +  gCp++k++e s +d k++ +tY  eH+h+
  Lsa017402 198 ADDYSWKKYGEKKIEGLPFPRVYYKCNTVkGCPARKRIELSLTDSKMLLVTYDREHRHH 256
                69************************7666****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.4E-5160193IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.3E-24190256IPR003657WRKY domain
PROSITE profilePS5081124.604192258IPR003657WRKY domain
SuperFamilySSF1182909.29E-21196257IPR003657WRKY domain
SMARTSM007744.3E-22197257IPR003657WRKY domain
PfamPF031061.9E-20199256IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MAVELVGIQT VEHLNRIFQL QNHDYAASSS FKQAVSALKR SGHARFRRGP SSSDPHAPSI  60
SSQSEEKLPI EPPLRESTAS EKFDLKRSGT DTTSSFLSIT SSVAGGSLEG SVSDGKQLSS  120
LGIVAPTLSF SSRKPPLPSS HRKRPSTDRP SGSLQGSGRE NNSVSRSGCH CCKRRKTGSK  180
REVRRIPIIG SKVESIPADD YSWKKYGEKK IEGLPFPRVY YKCNTVKGCP ARKRIELSLT  240
DSKMLLVTYD REHRHHHTPT PVPASFSGLK IH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-14185259275WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023765338.10.0WRKY transcription factor WRKY51-like
TrEMBLA0A2J6LAD50.0A0A2J6LAD5_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.12e-43WRKY DNA-binding protein 11