PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa017403

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Dof

Protein Properties

Length: 337aa MW: 36768.2 Da PI: 7.0718

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-30974	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.2	1.8e-38	38	95	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +alkcprC+s ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s Lsa017403 38 QALKCPRCESLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRS 95 789****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	4.3E-33	38	94	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-29	39	94	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.488	40	94	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	42	78	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MQDIHSIGSG GGGGRLFGGG GGDRRLRPHH HHQGHGPQAL KCPRCESLNT KFCYYNNYNL 60 SQPRHFCKSC RRYWTKGGVL RNVPVGGGCR KTKRSKPKSS NNNPSSDATV RKSSHSQNSS 120 SDSSSLTANT TTAKTKVKTT PIAPAAAAEV LSGIKSTNSA PTLLNFQESS SGFLNITQSS 180 APNPSFDPQL LNHSSAENNI FPEIGTFTSL ITSSTGQLPL GFNIAADISP FRMHHTGHLV 240 ENSNANQQQW MHTDHTMEDD LKVPDTGPLG FMDAHTDQTE FSGLHDKATN DELGTEDWDN 300 GTDQALFDLT GSVDQSYWSQ TQWDEHDHGH HQLNYLP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	12	20	GGRLFGGGG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023745512.1	0.0	dof zinc finger protein DOF5.4
TrEMBL	A0A2J6JQ42	0.0	A0A2J6JQ42_LACSA; Uncharacterized protein
STRING	XP_010101639.1	2e-77	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	9e-35	OBF binding protein 4