PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa017404
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 360aa    MW: 40883.8 Da    PI: 7.3205
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58683803PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41.1e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l++ ++++G+g +W + +++ g++R++k+c++rw++yl
        Lsa017404 14 KGPWSPEEDAKLKEFIEKFGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding40.28.1e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ eEd ++  + +  G++ W+ Ia+ ++ gRt++++k++w++
        Lsa017404  69 GEFSDEEDRIICSLYANIGSR-WSVIAAQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.201962IPR017930Myb domain
SuperFamilySSF466893.92E-2711109IPR009057Homeodomain-like
SMARTSM007171.8E-121364IPR001005SANT/Myb domain
PfamPF002494.9E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-241569IPR009057Homeodomain-like
CDDcd001671.37E-91662No hitNo description
PROSITE profilePS5129421.46963117IPR017930Myb domain
SMARTSM007171.2E-1167115IPR001005SANT/Myb domain
PfamPF002491.4E-1169111IPR001005SANT/Myb domain
CDDcd001671.11E-870113No hitNo description
Gene3DG3DSA:1.10.10.607.7E-2470117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGRAPCCDKA SVKKGPWSPE EDAKLKEFIE KFGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIRHGE FSDEEDRIIC SLYANIGSRW SVIAAQLPGR TDNDIKNYWN TKLKKKLLTM  120
VPSLQQKQTF FPSPTFQPPP YDHHAPDHFL TTSSSFYTYT PNFINVDSTS NSLPVHDINH  180
INVAADISSP HPPSANNLIS LMRSDTTIDV NDNCNNYLGF PDDPHTMCNT YYAASGMKEG  240
MLMFGSTACS SSEGGSSLSH VSHVNYNKDH HQYHHQKNQY QIKQEVDHQM TLHDQVLGDQ  300
IQTQSLMVNQ KPKEFMFTNH VSPLHNDLEE VKLNLNGYLF HDGDGSKTTH YQKGMCSYFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27141197110B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023749495.10.0transcription factor RAX2-like
TrEMBLA0A2J6JGE00.0A0A2J6JGE0_LACSA; Uncharacterized protein
STRINGPOPTR_0009s01270.14e-88(Populus trichocarpa)