PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa017573
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 312aa    MW: 34761.2 Da    PI: 5.449
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58678692PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.7e-13147191554
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                h e+Er+RR+++N++f  Lr+++P        K++Ka+ L  Av YI++L
  Lsa017573 147 HVEAERQRREKLNDRFYALRSVVPYV-----SKMDKASLLADAVTYINEL 191
                889**********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.2E-11758IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.501142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-17146203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.94E-15147196No hitNo description
PfamPF000101.6E-10147191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-17147202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-16148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
XAGDMQLKKY SSQRTEEVRV HGIKSLVCIP TVIGVVELGS CDTVKEDEGL IQLTKSVFDP  60
DNYFNVNLSP LVDEYENPNQ GVQNQVSVEG QLEMSMKDMH MSSSDSDPVE IGSSSLSTTN  120
VLSTPKKRVR KAKGEVAHSE VMALGYHVEA ERQRREKLND RFYALRSVVP YVSKMDKASL  180
LADAVTYINE LKARIQTLEE KVGTESSVAI TSRNESQMNM CHVRGSGTNN RDEVEVKLFG  240
SQAMIRVQSA HMNHPAAKLM DVLRSYDLKV QYASVSSVGD RMVQDVIVMV PYGFTCDADT  300
LKFVVLEKMD MD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-21147195957Transcription factor MYC2
5gnj_B3e-21147195957Transcription factor MYC2
5gnj_E3e-21147195957Transcription factor MYC2
5gnj_F3e-21147195957Transcription factor MYC2
5gnj_G3e-21147195957Transcription factor MYC2
5gnj_I3e-21147195957Transcription factor MYC2
5gnj_M3e-21147195957Transcription factor MYC2
5gnj_N3e-21147195957Transcription factor MYC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023742395.10.0transcription factor MYC2-like
TrEMBLA0A2J6JWQ90.0A0A2J6JWQ9_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.19e-39bHLH family protein