PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa017607

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

NAC

Protein Properties

Length: 297aa MW: 33746 Da PI: 7.903

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58682920	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-10768	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	109.9	2.8e-34	57	197	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgyW 83 lp+G++F+Ptd+e++ e+Lk+kv ++ + + +i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ + +W Lsa017607 57 LPAGVKFDPTDQEII-EHLKAKVGCDTnelhplI---DefipTIEGEtGICYTHPEKLP-GVSNDGQIRHFFHRPSKAYTTGTRKRRKVHmdaergETRW 151 799**********.99*99995554442...133333554448******.566667778***************844445544778 PP NAM 84 katgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++tgk+++vl +g++ g kk+Lv+y gr++k+ekt+Wvmh+y+l Lsa017607 152 HKTGKTRPVLI-SGSVEGYKKILVLYtnYGRQKKPEKTNWVMHQYHL 197 *********.9999******6658*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.07E-37	50	216	IPR003441	NAC domain
PROSITE profile	PS51005	33.46	57	216	IPR003441	NAC domain
Pfam	PF02365	1.3E-15	58	197	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MTWCNDESST LQNLSTSSTE RSTIQSRNPN IITSSCPSCG HTIQIQAKGL IPDLPGLPAG 60 VKFDPTDQEI IEHLKAKVGC DTNELHPLID EFIPTIEGET GICYTHPEKL PGVSNDGQIR 120 HFFHRPSKAY TTGTRKRRKV HMDAERGETR WHKTGKTRPV LISGSVEGYK KILVLYTNYG 180 RQKKPEKTNW VMHQYHLGNN EEEKDGEIVL SKVFYQTQPR NCASNLKEST LLDEKTERNP 240 NVRNMSFIEN YSISPFIPYD INRRQLSREI PSHVIPSFVL QDDTSPFIHL PSGSSKE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023736762.1	0.0	NAC domain-containing protein 73-like
Refseq	XP_023736763.1	0.0	NAC domain-containing protein 73-like
Refseq	XP_023736765.1	0.0	NAC domain-containing protein 73-like
Refseq	XP_023736766.1	0.0	NAC domain-containing protein 73-like
Swissprot	O49459	1e-112	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A2J6K901	0.0	A0A2J6K901_LACSA; Uncharacterized protein
STRING	VIT_12s0028g03050.t01	1e-131	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-111	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]