PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa017702
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family LBD
Protein Properties Length: 179aa    MW: 19932.9 Da    PI: 7.2636
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-34362PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.41.1e-388108199
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.paeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                +C aCk+lrrkCak+Cv+apyf p+++   +f++vh++FGa+n  kll ++pe++r da+ sl+yeA  r+rdPvyG+vg +++lqqq+e+l+aela+++
  Lsa017702   8 PCGACKFLRRKCAKGCVFAPYFePDDRgLTDFEAVHRVFGAKNAAKLLLRTPENKRLDAVVSLCYEALSRVRDPVYGCVGRVFNLQQQVEKLQAELAYVQ 107
                7*********************7666667********************************************************************998 PP

     DUF260  99 e 99 
                +
  Lsa017702 108 A 108
                7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.1697110IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-378107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MSRNCGGPCG ACKFLRRKCA KGCVFAPYFE PDDRGLTDFE AVHRVFGAKN AAKLLLRTPE  60
NKRLDAVVSL CYEALSRVRD PVYGCVGRVF NLQQQVEKLQ AELAYVQARV SILKHHPSSC  120
QPATNRPMLS TETLISSSML SCVHFGVEQP SPVTLTPCFS RENDASIEET LFEEDNIEM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-3561039104LOB family transfactor Ramosa2.1
5ly0_B4e-3561039104LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023773002.11e-132LOB domain-containing protein 19-like
SwissprotO813221e-49LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A2J6KTS61e-130A0A2J6KTS6_LACSA; Uncharacterized protein
STRINGcassava4.1_030486m1e-58(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.16e-52LOB domain-containing protein 31