PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa017717
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 282aa    MW: 32354 Da    PI: 7.0445
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58678013PU_unrefUnigeneView CDS
PUT-187a-Lactuca_sativa-55861PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.43.9e-143279148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W+++Ed++l +++  +G g+W++++   g+ R +k+c++rw +yl
        Lsa017717 32 KGLWSPDEDQKLREYIVNYGHGCWSAVPINAGLERNGKSCRLRWINYL 79
                     678*******************************************97 PP
2Myb_DNA-binding45.71.5e-1485130148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++  E+e ++ ++ +lG++ W++ +++++ gRt++++k++w++yl
        Lsa017717  85 RGAFSMHEEETILTLHGLLGNK-WSLMSQHLP-GRTDNEIKNHWHSYL 130
                      899*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.4392779IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-212782IPR009057Homeodomain-like
SuperFamilySSF466899.9E-2830126IPR009057Homeodomain-like
SMARTSM007171.8E-113181IPR001005SANT/Myb domain
PfamPF002496.0E-133279IPR001005SANT/Myb domain
CDDcd001676.59E-93579No hitNo description
PROSITE profilePS5129422.37180134IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-2383134IPR009057Homeodomain-like
SMARTSM007174.4E-1284132IPR001005SANT/Myb domain
PfamPF002491.3E-1285130IPR001005SANT/Myb domain
CDDcd001671.23E-792130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
XGDIPFIITK FSFHSPVMRC KPLEKTKLKH KKGLWSPDED QKLREYIVNY GHGCWSAVPI  60
NAGLERNGKS CRLRWINYLR PGLKRGAFSM HEEETILTLH GLLGNKWSLM SQHLPGRTDN  120
EIKNHWHSYL KKRVAKSESL EAHNTNTGNV ESSSSYMNSM SRNLSFESSH TANRSYIDMD  180
QQIPQTQINK LPKILFADWL SLEEFHGHNG LEFNSGASNG SNYQYTPVNE LISNEGSIDS  240
TVTASHESNY QTEDMFHNNQ MKIDQIFNFT GGDINIEDFL YM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-23321347108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023753412.10.0transcription factor LAF1-like
TrEMBLA0A2J6M1G20.0A0A2J6M1G2_LACSA; Uncharacterized protein
STRINGXP_009770980.16e-85(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.12e-54myb domain protein 18