PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa017726

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

TCP

Protein Properties

Length: 295aa MW: 33782.9 Da PI: 8.8353

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58678438	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	139.8	2.2e-43	107	248	3	136
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg....kaaksaa 95 kkd hski T++g+RdRRvRls+++a++fF+Lq++LGfdk+skt++WL++++k aikel++ + s+s++ + + ++ ++++ + + ++ Lsa017726 107 SKKDGHSKINTAQGPRDRRVRLSIDIARKFFELQNMLGFDKASKTLDWLFTKSKVAIKELVKETKHSSSSTvstGQCELAFLDDDEGENksefRFVNGKM 206 69***********************************************************6666655554433333333332222244556666777 PP TCP 96 kskksqksaasalnlak.esrakarararertrekmriknkl 136 k+ +++++ + ++a+ +sra+arararert+ekmrik ++ Lsa017726 207 KKITQKQKSGHRVDVAReQSRAEARARARERTKEKMRIKMQQ 248 555555555555666666******************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.0E-37	107	243	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	34.659	108	166	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	10.178	224	241	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
ESINFQILFL NTMFSSNLSQ KIPSSSHVSP TFSSFFEKVG FYFSHHENNS NPFVSPPPSS 60 PPPEVTANTQ DLTCQQVQEG SVLQYSDDYD DLLESIVYPC KKKTVNSKKD GHSKINTAQG 120 PRDRRVRLSI DIARKFFELQ NMLGFDKASK TLDWLFTKSK VAIKELVKET KHSSSSTVST 180 GQCELAFLDD DEGENKSEFR FVNGKMKKIT QKQKSGHRVD VAREQSRAEA RARARERTKE 240 KMRIKMQQYD LKKFPDEYSC HAVSSSNLTI QSSFWGQIES QSDYNESIVE KMFFM

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Retards growth rate and reduces organ number in the dorsal region of flowers. Binds specifically to the DNA sequence 5'-GGNCCCNC-3', and is able to bind to the RAD promoter sequence in vivo. {ECO:0000269\|PubMed:16236768, ECO:0000269\|PubMed:8893002}.
UniProt	Involved in the dorsovental asymmetry of flowers. Retards growth rate and reduces organ number in the dorsal region of flowers (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023746487.1	0.0	transcription factor CYCLOIDEA-like
Swissprot	O49250	4e-28	CYCLD_ANTMA; Transcription factor CYCLOIDEA
Swissprot	Q9SBV6	3e-28	CYCLD_ANTLN; Transcription factor CYCLOIDEA (Fragment)
TrEMBL	A0A2J6MA16	0.0	A0A2J6MA16_LACSA; Uncharacterized protein
STRING	XP_009592164.1	3e-33	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	7e-26	TCP domain protein 12

Publications ? help Back to Top
Vieira CP,Vieira J,Charlesworth D Evolution of the cycloidea gene family in Antirrhinum and Misopates. Mol. Biol. Evol., 1999. 16(11): p. 1474-83 [PMID:10555278] Gubitz T,Caldwell A,Hudson A Rapid molecular evolution of CYCLOIDEA-like genes in Antirrhinum and its relatives. Mol. Biol. Evol., 2003. 20(9): p. 1537-44 [PMID:12832647] Reeves PA,Olmstead RG Evolution of the TCP gene family in Asteridae: cladistic and network approaches to understanding regulatory gene family diversification and its impact on morphological evolution. Mol. Biol. Evol., 2003. 20(12): p. 1997-2009 [PMID:12885953] Costa MM,Fox S,Hanna AI,Baxter C,Coen E Evolution of regulatory interactions controlling floral asymmetry. Development, 2005. 132(22): p. 5093-101 [PMID:16236768] Luo D,Carpenter R,Vincent C,Copsey L,Coen E Origin of floral asymmetry in Antirrhinum. Nature, 1996. 383(6603): p. 794-9 [PMID:8893002]