PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa017734

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

G2-like

Protein Properties

Length: 261aa MW: 28850 Da PI: 7.0875

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-11899	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.8	5.8e-34	39	93	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPk i+++m+vkgLtl+h+kSHLQkYR+ Lsa017734 39 KPRLRWTAELHERFVDAVTQLGGPDKATPKMIMRTMGVKGLTLYHLKSHLQKYRM 93 79****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.3E-33	36	94	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.811	36	96	IPR017930	Myb domain
SuperFamily	SSF46689	5.2E-17	38	95	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.9E-24	39	94	IPR006447	Myb domain, plants
Pfam	PF00249	6.0E-8	41	92	IPR001005	SANT/Myb domain
Pfam	PF14379	2.4E-25	137	183	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MYSGIHSIPL EGTGIDFPRP LTSTNLVGDP CLVLTTDPKP RLRWTAELHE RFVDAVTQLG 60 GPDKATPKMI MRTMGVKGLT LYHLKSHLQK YRMGKQSCKE FPENSKEASC IAESQDMGSS 120 TSSSTRMMAQ DLNDGFEVTE ALRAQMEVQR RLHDQLEVQH RLQLRIESQG KYLQSILEKA 180 CKAINDQAIA TAGLEAAREE LSELAIKVAN DCPPSVTQID SCLTSNPSPE SPMGLSPQAA 240 ALKKRQRAMF MQAEWMASNT G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-19	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-19	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-19	39	95	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-19	39	95	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-19	39	95	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-19	39	95	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-19	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-19	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-19	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-19	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-19	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-19	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023767291.1	0.0	protein PHR1-LIKE 2-like
Swissprot	Q94A57	1e-120	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A2J6L676	0.0	A0A2J6L676_LACSA; Uncharacterized protein
STRING	XP_006493809.1	1e-131	(Citrus sinensis)

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]