PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa017793
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GATA
Protein Properties Length: 117aa    MW: 12220.5 Da    PI: 8.1026
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58677808PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.98.8e-211145135
       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
               C+ C+t+kTplWR+gp g+k+LCnaCG++yrkk++
  Lsa017793 11 CVDCKTSKTPLWRSGPAGPKSLCNACGIRYRKKRS 45
               *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.637541IPR000679Zinc finger, GATA-type
SMARTSM004012.2E-13556IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.42E-13946No hitNo description
Gene3DG3DSA:3.30.50.104.0E-171045IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS0034401136IPR000679Zinc finger, GATA-type
CDDcd002027.15E-151158No hitNo description
PfamPF003201.3E-181145IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MESVSCEEKL CVDCKTSKTP LWRSGPAGPK SLCNACGIRY RKKRSPNGSD KRIEKQAPFS  60
PSSSSSSSCS TSAALYSDEV VGDEKAVEDK GGGGRKRGGG VAAAEISDDE EGEGRKG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19299GGRKRGGG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023772526.14e-44GATA transcription factor 16-like
TrEMBLA0A2J6ME571e-42A0A2J6ME57_LACSA; Uncharacterized protein
STRINGXP_010094010.12e-17(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.15e-19GATA transcription factor 15