PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa017825
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family HSF
Protein Properties Length: 358aa    MW: 40451.6 Da    PI: 8.0555
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58686773PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.72.9e-36261182103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fkkg+k++l++i+
     Lsa017825  26 FLTKTYQLVDDPSTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEKHMLCEIH 113
                   9*****************************************************************99.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
     Lsa017825 114 RRKTS 118
                   **987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.1E-3818110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.8E-5922115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.04E-3423115IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.7E-202649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3126115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-206476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-207789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MASMIDNSCE GILLSLESHK SMPAPFLTKT YQLVDDPSTD HIVSWGEDDT TFVVWRPPEF  60
ARDLLPNYFK HNNFSSFVRQ LNTYGFRKIV PDRWEFANEF FKKGEKHMLC EIHRRKTSQP  120
HVGLNHHHFT GINGGGNGFF SYPSTRDSIS PPNSDDHLYC DSPPPLSSPT TTASATTAAT  180
MFGIFPNNSI SSNIRGNSVT ALSEDNERLR RSNNMLMSEL AHMRKLYNDV IYFVQNHVKP  240
VTPSNTYPSS LLLPSTNNPL MVQKQQQTTS FFNNANATVV YPSQPHQLEL YDSTIRNIVR  300
DQDTVNNAAR TKLFGVPLSK KRVHPEYGSA NTMVETHKAR LILEKDDLGL KLMPPSPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-212211817123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023766707.10.0heat stress transcription factor B-4-like
SwissprotQ9C6351e-110HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A2J6L7J50.0A0A2J6L7J5_LACSA; Uncharacterized protein
STRINGVIT_18s0001g10380.t011e-151(Vitis vinifera)