PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa017834
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ZF-HD
Protein Properties Length: 338aa    MW: 36608.6 Da    PI: 8.8303
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58684439PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer111.15.9e-3563120359
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                   v+Y+eClkNhAas+GghavDGCgEfmps +++ +++++lkCaACgCHRnFHRr+++e
    Lsa017834  63 VVTYRECLKNHAASMGGHAVDGCGEFMPSATSTpTDPTSLKCAACGCHRNFHRRDPDE 120
                  589**************************99999********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-2147117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.5E-2964118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.4E-3165117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.64766117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.34E-17210281IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-28213281IPR009057Homeodomain-like
TIGRFAMsTIGR015657.8E-25222278IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MDVTSPPPTT TTTTTPTTSS IKALDQDARI QPNSVQKQLP PPFTNGVLKR HKPRHHHNPT  60
PVVVTYRECL KNHAASMGGH AVDGCGEFMP SATSTPTDPT SLKCAACGCH RNFHRRDPDE  120
SFLNSPPVQH LIEYQPHHRH HPPPPQPQPI SLGGVRGSSS SPADSPSPPP ISSSYYPSAP  180
HMLLALSAGL SAQAPENHHN PSIHFTPSSA GGSIIGSNSN GKKRFRTKFT QDQKEKMHEL  240
AERVGWKMQK RDEDLIIGFC NEIGVDKGVF KVWMHNNKMT FGIKKDSGNH NNDNGSPGGG  300
IDFLTNRNNH HEHHQPPHND SISSGGNAIG TNGSSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-182232781873ZF-HD homeobox family protein
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023758368.10.0zinc-finger homeodomain protein 9-like
TrEMBLA0A2J6LQG50.0A0A2J6LQG5_LACSA; Uncharacterized protein
STRINGXP_010257380.16e-92(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39760.12e-28homeobox protein 23