PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa017876
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 287aa    MW: 32930.7 Da    PI: 6.6094
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58677222PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.96.4e-071071431455
                HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++N++f+ L +++P +     +K++K++ L  +++Y++ L+
  Lsa017876 107 KNLNHRFSLLSSMVPCR-----GKVDKVSLLDDTIDYLQTLE 143
                79**************9.....9****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.55993142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.008398148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-4107143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.28E-5107147No hitNo description
SuperFamilySSF474591.96E-9107162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-8107162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
XNNNNNNNSS SSSDCISQNL VSGPSNLWTE DDSRYQSVLS KIFNNTQRLI LGPHSRSCSY  60
NESAFMSWKN HNGMELERNR KGSCSQMLLK KVLFEVPKMH EHEDDTKNLN HRFSLLSSMV  120
PCRGKVDKVS LLDDTIDYLQ TLERRVKVLE SNEDRKNKKS QQHDMIQMQE RTCDNYYGNK  180
RKACCDVEDL QVEEEEEESC SSDCITVSAI EKDVTIEIRC RWRENMMVQV FYAISSLNLE  240
SYSVHSSNVD GILTLTIESK LKSCTASTAK MIRQALQRVI GRSCSSF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023772184.10.0transcription factor EGL1 isoform X1
RefseqXP_023772185.10.0transcription factor EGL1 isoform X2
RefseqXP_023772186.10.0transcription factor EGL1 isoform X2
TrEMBLA0A2J6KVH90.0A0A2J6KVH9_LACSA; Uncharacterized protein
STRINGEOY247505e-56(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-47bHLH family protein