PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa017918
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C2H2
Protein Properties Length: 199aa    MW: 21894.4 Da    PI: 8.5181
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S32122093PU_unrefUnigeneView CDS
PUT-187a-Lactuca_sativa-36440PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00026991123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++C++ F ++  L  H++ H
  Lsa017918 69 FECQYCKRDFANSQALGGHQNAH 91
               89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.12E-66596No hitNo description
Gene3DG3DSA:3.30.160.603.6E-46795IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.3E-56893IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.6556996IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
XAAHCIVIFQ IFTMGESSSS PRGRNLSDFI DHNASFSSSS SVMKLFGVAV TDGGIAPATE  60
QPDCDSKRFE CQYCKRDFAN SQALGGHQNA HKKERQRLKR VHFMSNHHRR FAAPVTIINA  120
HAARSGHFQQ PQMAVVDHYI CPSPPPQVLS GVPLRFPSRF YIGRPQHLSL TTAGMSSNSS  180
RMIEAADDNG DGVDVDLHL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023747082.11e-145zinc finger protein GIS3-like
TrEMBLA0A2J6JLQ81e-113A0A2J6JLQ8_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41940.17e-15zinc finger protein 8