PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa017979

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

WOX

Protein Properties

Length: 244aa MW: 27418.8 Da PI: 8.8173

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-1662	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.9	2.6e-21	112	171	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ Lsa017979 112 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITSQLckygKIEGKNVFYWFQNHKARERQ 171 7***************99************************************97 PP
2	Wus_type_Homeobox	117.1	8.1e-38	112	173	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+ G+rtPn+++i++it++L +yGkie+kNVfyWFQN+kaRerqkq Lsa017979 112 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITSQLCKYGKIEGKNVFYWFQNHKARERQKQ 173 8***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.236	107	172	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.55E-12	107	176	IPR009057	Homeodomain-like
SMART	SM00389	9.7E-5	109	176	IPR001356	Homeobox domain
Pfam	PF00046	5.3E-19	112	171	IPR001356	Homeobox domain
CDD	cd00086	3.18E-5	112	173	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.5E-7	113	171	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MGLSSMKVHQ FARGGGFWGD DDQSSSSGLT LGVCKRLHPL TPKLTTSDST DTCFTMNNIS 60 VNVSNSSSSN SHVTPATFDL KSFIRPESCP IQLVSPDHKK DSPQVETHPG GTRWNPTQEQ 120 IGILEMLYRG GMRTPNAQQI EQITSQLCKY GKIEGKNVFY WFQNHKARER QKQKRNNLGL 180 NHSLRSTPAS TMINSISLNP RGEVVESPYK KCRSWSFECL EKDEEDNKTL ELFPLHPEGR 240 SRSS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023764160.1	0.0	WUSCHEL-related homeobox 4-like
Swissprot	Q6X7J9	7e-72	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	A0A2J6LD29	1e-179	A0A2J6LD29_LACSA; Uncharacterized protein
STRING	EOY14402	2e-93	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	3e-73	WUSCHEL related homeobox 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]