PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa017982
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 225aa    MW: 26039.3 Da    PI: 5.6588
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58680860PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.92.8e-061159554
               HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS
        HLH  5 hnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54
                +  E+ RR++++  +++L +l+P+ +    sk     ++ + +++eYI+sL
  Lsa017982 11 RKVTEKIRRNQMKFLYSRLFSLIPPhL---ISKGgDQVSDRVDRTIEYIQSL 59
               5789*********************77...444448888***********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.24E-4664No hitNo description
PROSITE profilePS508889.458659IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-6763IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-7874IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MERGNMKKPE RKVTEKIRRN QMKFLYSRLF SLIPPHLISK GGDQVSDRVD RTIEYIQSLK  60
SSLEMSQIRK EQLSSTKKRS HESTNSNKYK SIDIQIHEMS PDLDVVLITG LTTQSDFYDV  120
VRLLDQYSSE VALANFSSSG HSTFHIRHKK IETEEMSQRL MILLQGYSNV KELENDQGFS  180
NELELGNDYA SSCDQLESNL NIWDFDFQSN VWGWELEGLP MSITS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17680KKRSH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023743674.11e-166uncharacterized protein LOC111891843
TrEMBLA0A2J6JTW21e-160A0A2J6JTW2_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.16e-13bHLH family protein