PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa017998
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family B3
Protein Properties Length: 267aa    MW: 31174.6 Da    PI: 10.2667
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S29958501PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.43.8e-1120911698
               EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                ++p +f+++ +    + +++tl+     +W+v++  + +    ++++GW++F ++ng++e Df+vFk++g++ f   + vf+
  Lsa017998 20 PSIPSSFLRNLN--CGRCFKVTLRR-GRHEWSVNI--DDG----IFGGGWRRFMRENGVQEFDFIVFKHQGSMVF--DFLVFD 91
               589999996654..45777888766.6699*****..444....69**********************9998988..666666 PP
2B359.27.2e-19160251196
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                f+++l+p +  k++ l +p kfa ++g+k   + +++l+d +grsW+v+l  +kk+++ +++++G + F  angLk gD + F+l+++ ++  + v +
  Lsa017998 160 FISTLKPCSF-KKSALHIPVKFAVQNGLK--IG-EMILRDDKGRSWKVQL--NKKQEKhIYIGRGLRAFRVANGLKKGDAFKFELIENeNDDXPIVNF 251
                5566655555.5555***********999..44.7***************..77777769**************************987888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.756193IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-16495IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-164100IPR015300DNA-binding pseudobarrel domain
CDDcd100176.71E-12791No hitNo description
SMARTSM010193.7E-8893IPR003340B3 DNA binding domain
PfamPF023625.8E-81986IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.1E-19155242IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.9E-15156242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.67E-13158252No hitNo description
PROSITE profilePS5086311.491159257IPR003340B3 DNA binding domain
SMARTSM010192.1E-18159255IPR003340B3 DNA binding domain
PfamPF023621.7E-17160252IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MADPPTHFFK FIHPSFKFNP SIPSSFLRNL NCGRCFKVTL RRGRHEWSVN IDDGIFGGGW  60
RRFMRENGVQ EFDFIVFKHQ GSMVFDFLVF DQSTCEKQYP NLFDEMDVEE HLTESGPKKL  120
KKRKRKDYAY SQDQENFQVK ETDSTIKKAT SSTLNNHPYF ISTLKPCSFK KSALHIPVKF  180
AVQNGLKIGE MILRDDKGRS WKVQLNKKQE KHIYIGRGLR AFRVANGLKK GDAFKFELIE  240
NENDDXPIVN FFLLKSKPIN TDRKAKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117123KKLKKRK
2117125KKLKKRKRK
3120125KKRKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023735326.11e-120B3 domain-containing protein REM8-like isoform X1
TrEMBLA0A2J6KKS00.0A0A2J6KKS0_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.11e-26B3 family protein