PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa018128

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

NAC

Protein Properties

Length: 286aa MW: 32513.8 Da PI: 9.143

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58684611	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-30377	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	106.8	2.6e-33	57	197	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...lelee....vikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgyW 83 lp+G++F+P+d+el+ e+L++kv+ + + +i++v+ i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ + +W Lsa018128 57 LPAGVKFDPSDHELL-EHLEAKVRLDAhriH---PlideFIPTVEgengICYTHPEKLP-GVSKDGLVRHFFHRPSKAYTTGTRKRRKVHseidgsETRW 151 799**********.99*99984551...233333444433444******.555666688***************855455555788 PP NAM 84 katgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++tgk+++v+ k++++g kk+Lv+y g+++k+ekt+Wvmh+y+l Lsa018128 152 HKTGKTRPVFL-KTKVKGYKKILVLYanYGKQKKPEKTNWVMHQYHL 197 *********.8999******6668999**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-37	50	216	IPR003441	NAC domain
PROSITE profile	PS51005	32.668	57	216	IPR003441	NAC domain
Pfam	PF02365	2.6E-15	58	197	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MTWCSDCSDT PGVIIKRFPS SNDNNSIMDN KKTVPCPSCG HRINCYEKAR IHDLPGLPAG 60 VKFDPSDHEL LEHLEAKVRL DAHRIHPLID EFIPTVEGEN GICYTHPEKL PGVSKDGLVR 120 HFFHRPSKAY TTGTRKRRKV HSEIDGSETR WHKTGKTRPV FLKTKVKGYK KILVLYANYG 180 KQKKPEKTNW VMHQYHLGNN EDEKEGELVV SKIFYQTQPR QCGSNVVKDN IISPLVKSNG 240 RNAHEVTHGT NNTTFVEYFS PSLVSYQQNL QHAHDLNLHD GSSVVP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023738272.1	0.0	NAC domain-containing protein 73
Swissprot	O49459	1e-116	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A2J6K5K3	0.0	A0A2J6K5K3_LACSA; Uncharacterized protein
STRING	XP_002517849.1	1e-141	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-118	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]