PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa018230
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family WRKY
Protein Properties Length: 289aa    MW: 33343.8 Da    PI: 9.8773
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58683152PU_unrefUnigeneView CDS
PUT-187a-Lactuca_sativa-12694PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY65.58.7e-21131192159
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                +dDg++WrKYGqK+++++++ rsYYrCt++   gC + k+v++ ++ p   ++tY  +H+++
  Lsa018230 131 VDDGHAWRKYGQKHINNTNHQRSYYRCTYKfdqGCLAAKQVQKIQDKPPKYKTTYMRNHTCQ 192
                59***************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.7E-23117193IPR003657WRKY domain
PROSITE profilePS5081118.705126189IPR003657WRKY domain
SuperFamilySSF1182901.24E-22126192IPR003657WRKY domain
SMARTSM007741.1E-29131193IPR003657WRKY domain
PfamPF031061.8E-21132192IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDQTATWPES LPSDRIKAFH ELIQGKELTN NLREMLQWPR KIECNPTYED GLVMQIIAMF  60
KNTLLILGSC TSNQHLEIPT SDMCLSYSSD GQKSENSGKN EGNIIPAKRK KGCHKRRKNS  120
WTSSQVTSTL VDDGHAWRKY GQKHINNTNH QRSYYRCTYK FDQGCLAAKQ VQKIQDKPPK  180
YKTTYMRNHT CQNLQRAPEI ILDSLNSKDT SILFNFETKG LIARTRVGTF FPSIKHEQKE  240
SYPSHGNLRN EEYSFANDLH CALNACVSNK SVRTKYLRLK RYKHSITGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-19131192869OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023772873.10.0probable WRKY transcription factor 70
TrEMBLA0A2J6KTT00.0A0A2J6KTT0_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.15e-38WRKY DNA-binding protein 70