PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa018242
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 254aa    MW: 29159 Da    PI: 8.7787
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58674500PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-43066PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.2e-161562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed ll+++++++G g W++++ + g++R++k+c++rw++yl
        Lsa018242 15 KGAWTADEDMLLKKCIEKYGEGKWHLVPLRTGLNRCRKSCRLRWLNYL 62
                     79********************************************97 PP
2Myb_DNA-binding452.5e-1468113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg + ++E +l ++++k+lG++ W++Ia +++ gRt++++k++w+++l
        Lsa018242  68 RGDFGEDEVDLMLRLHKLLGNR-WSLIAGRIP-GRTANDVKNYWNTHL 113
                      78999*****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.0251066IPR017930Myb domain
SuperFamilySSF466898.07E-2812109IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.4E-211264IPR009057Homeodomain-like
SMARTSM007171.2E-141464IPR001005SANT/Myb domain
PfamPF002492.9E-151562IPR001005SANT/Myb domain
CDDcd001673.83E-111762No hitNo description
Gene3DG3DSA:1.10.10.603.7E-2165115IPR009057Homeodomain-like
PROSITE profilePS5129417.05167117IPR017930Myb domain
SMARTSM007176.2E-1367115IPR001005SANT/Myb domain
PfamPF002495.6E-1368113IPR001005SANT/Myb domain
CDDcd001672.05E-973113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
NKMRPGNNTG IGLRKGAWTA DEDMLLKKCI EKYGEGKWHL VPLRTGLNRC RKSCRLRWLN  60
YLRPNIKRGD FGEDEVDLML RLHKLLGNRW SLIAGRIPGR TANDVKNYWN THLRSNSKQK  120
KESKDNKSLQ DTMVTTIKPQ PHTFSKTLKQ YMADNPQIVA HNGSNILRSS KDGVNNNLNM  180
SLGSILSPNV LDNTINEYLD DLLFDDRENE MNNQIGWSFG VSMNGETSHV MAQEDDYKGL  240
FDFPVDEAMW DLTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-22131145105B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023769216.10.0transcription factor MYB90-like isoform X2
SwissprotQ9FNV91e-61MY113_ARATH; Transcription factor MYB113
TrEMBLA0A2J6MEX00.0A0A2J6MEX0_LACSA; Uncharacterized protein
STRINGXP_009627993.13e-68(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.16e-64myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]