PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa018325
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family WRKY
Protein Properties Length: 496aa    MW: 54327.8 Da    PI: 8.3457
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58691430PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-42031PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.8e-30208265260
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                dDgynWrKYGqK+vkgse+prsYY+Ct+++C+vkk  ers   ++++ei+Y+g+H+h+k
  Lsa018325 208 DDGYNWRKYGQKVVKGSEHPRSYYKCTHPNCEVKKIFERSY-TGQITEIVYKGTHDHPK 265
                8****************************************.9**************85 PP
2WRKY104.94.2e-33371429159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+v+g+++prsYY+CtsagC+v+k+ver+++dpk+v++ Yeg+Hnh+
  Lsa018325 371 LDDGYRWRKYGQKVVRGNPNPRSYYKCTSAGCNVRKHVERASHDPKAVITAYEGKHNHD 429
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-25203266IPR003657WRKY domain
SuperFamilySSF1182905.62E-24206266IPR003657WRKY domain
SMARTSM007741.5E-31207265IPR003657WRKY domain
PfamPF031065.3E-23208264IPR003657WRKY domain
PROSITE profilePS5081122.745208266IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.6E-37356431IPR003657WRKY domain
SuperFamilySSF1182901.44E-28363431IPR003657WRKY domain
PROSITE profilePS5081138.469366431IPR003657WRKY domain
SMARTSM007748.0E-38371430IPR003657WRKY domain
PfamPF031063.7E-25372429IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MDDQHSPHSH SSTTATSNVD VTGHRRQGGG DVFGLRSAGA GGGAKYKLMS PAKLPISRSN  60
SINVPPGLSP TSFLESPVLL TNMKAEPSPT TGSFFNSSLM QRSITTAAFS LDANCSSRKP  120
LDDSNSGFFE FKPHTQITSV PQSSSAGYQV STGSNLQRGE PSGQYQNQSE PQSYASASSS  180
AYMSHEETNG LGKHKDAGPT IQVDRSSDDG YNWRKYGQKV VKGSEHPRSY YKCTHPNCEV  240
KKIFERSYTG QITEIVYKGT HDHPKPQPSR RFSAGALMSI QEENLDKLQY ANYQPGMSAN  300
NVQNPNLDDS GTPVQSPKYA NQENTDGIDD EDDPYSKKKA TDFGALDVTP VVKPIREPRV  360
VVQTTSEVDI LDDGYRWRKY GQKVVRGNPN PRSYYKCTSA GCNVRKHVER ASHDPKAVIT  420
AYEGKHNHDV PVVKNSNHDV VGPGNPRARL DDNNNAICLD LVVGNGFPDH PQPPHGATLH  480
SQVHVQNSNF RKVVLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-37208431877Probable WRKY transcription factor 4
2lex_A2e-37208431877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023740029.10.0probable WRKY transcription factor 20
SwissprotQ93WV01e-136WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A2J6K1T90.0A0A2J6K1T9_LACSA; Uncharacterized protein
STRINGXP_008227105.11e-164(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-137WRKY family protein