PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa018329

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

ZF-HD

Protein Properties

Length: 135aa MW: 14404.1 Da PI: 6.2652

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58658168	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	73.1	4.3e-23	92	135	3	47
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACg 47 vrY+eClkNhA+s+Gg a+DGCgEfmps geegt +al+C+AC+ Lsa018329 92 MVRYRECLKNHAVSIGGIATDGCGEFMPS-GEEGTLEALTCSACN 135 79************************9.999*********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	4.0E-21	93	135	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-15	93	135	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.8E-22	94	135	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	22.48	95	135	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MEHQGGEMAL PINSTYGGGH GHGHMLHHES APHNHIVPSS AAAVAVAQKQ HQHQLQLPIT 60 NGPTRIVPLP SCSSLEESVQ VPYTNNDDNR MMVRYRECLK NHAVSIGGIA TDGCGEFMPS 120 GEEGTLEALT CSACN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023738137.1	4e-94	zinc-finger homeodomain protein 3-like
TrEMBL	A0A2J6K5Z9	9e-93	A0A2J6K5Z9_LACSA; Uncharacterized protein
STRING	EOY25774	4e-30	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14440.2	2e-21	homeobox protein 31