PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa018426

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Dof

Protein Properties

Length: 219aa MW: 24786.2 Da PI: 8.2205

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-27641	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.5	2.8e-38	47	104	6	63
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 l+cprC+s+ntkfCyynnysl+qPry+CkaCrryWt+GG+lrnvPvGgg+rknk+sss Lsa018426 47 LNCPRCKSSNTKFCYYNNYSLTQPRYLCKACRRYWTQGGSLRNVPVGGGSRKNKRSSS 104 79****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	4.8E-33	47	101	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-19	47	92	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.64	47	101	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	49	85	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MDASQWKLEA VNNNNNNNNI DQVEERKVRP QEQEQEQGQA QPAGGPLNCP RCKSSNTKFC 60 YYNNYSLTQP RYLCKACRRY WTQGGSLRNV PVGGGSRKNK RSSSSSITTD QDTQHLNLSF 120 QVQQPDYHHN HNHNHGFSQF LKLPKVENSS NQLINPFGSN SNPVFNVQVD EINGGFQEIL 180 LPFGVMMNQQ HLSSTRTIRE GDAQNMGSTG YWTSTFLGD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023742325.1	1e-164	dof zinc finger protein DOF2.5-like isoform X1
TrEMBL	A0A2J6JWV2	1e-163	A0A2J6JWV2_LACSA; Uncharacterized protein
STRING	GLYMA19G44670.3	1e-41	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	4e-30	Dof family protein