PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa018449

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Protein Properties

Length: 784aa MW: 87051.5 Da PI: 7.2761

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-27145	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.5	5.9e-19	259	359	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ ++++d +g++W +++++ +++s++yvl+ G ++ +Lk+gD+v+F++++ e++l++++ Lsa018449 259 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPIRIQDVKGKEWLFQFRFwpNNNSRMYVLE-GVTPCIQSMQLKAGDTVTFSRME-PEGKLLMGF 356 99************************555566778***********99899999999.*******************876.888888888 PP E-S CS B3 97 frk 99 +++ Lsa018449 357 RKA 359 765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.6E-30	253	361	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.63E-23	257	358	No hit	No description
SuperFamily	SSF101936	1.11E-19	257	358	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	3.5E-22	259	360	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.0E-16	259	358	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.321	259	360	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	13.287	520	570	IPR011124	Zinc finger, CW-type
Pfam	PF07496	7.0E-10	525	567	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 784 aa Download sequence Send to blast
XTAYEQLAFC ELFHLEDTGW RECTSCGKRL HCGCIASTAA IELLENGGVS CASCSNSLRR 60 DPSTSEDKLG ECGISVENSI GEIPSSSNKM LKQSNDDGQK YPLPSDNDDT STSQMKQEEI 120 FPISTFEPAH GTKSFKYRET TGGKDVIGSL VQTDLTMGLA SSSSSSQKSP FLLPLDGREL 180 NKPFQQGPWS RHILPKVPKS VFSQGFDANI GMNSQIRIAR PPVEGRIKNQ LLPRYWPRIT 240 EQELQQISGD SNATVVPLFE KVLSASDAGR IGRLVLPKAC AEAYFPPISQ PEGLPIRIQD 300 VKGKEWLFQF RFWPNNNSRM YVLEGVTPCI QSMQLKAGDT VTFSRMEPEG KLLMGFRKAS 360 VSASVQDSRM GAMHNGVFPS GSSPSLSGVE NLSNMSDYSG LLQSLKRNTD SHLNPLSRSM 420 SLTIGDASWH ANEKQGSKSR ADSFQPDKKR SRNISSKSKR LLIESQDALE LKYTWEELQD 480 MLTPPNTLNP TSVTIEDQDF EEYEEPPVFG KGSIFTARSS GEQEQWAQCD NCSKWRRLPI 540 DFLLPAKWTC QENVWDHMRS ACVAPDELGP RELDHLLRLA KEFHKWRNSM NQKPPPDQDQ 600 GENQNQNQAE PPPDPSVATT TKHPRHRPGC SCIVCSQPPS GKGKHKPNCT CNVCMTVKRR 660 FKTLMLRKQQ RQSEREAEIA EKNNQLKLGP TSNPKEEIEG VMKSQQSSGG GGKSQLDLNI 720 RPHPHVSMMS LLQAANQPLE TYMKQNGLTT LIPEPQGTSS GSQPLPQQQA SSTAQDEQNN 780 QNSS

Sequence ? help Back to Top

Protein Sequence Length: 784 aa Download sequence Send to blast

XTAYEQLAFC ELFHLEDTGW RECTSCGKRL HCGCIASTAA IELLENGGVS CASCSNSLRR  60
DPSTSEDKLG ECGISVENSI GEIPSSSNKM LKQSNDDGQK YPLPSDNDDT STSQMKQEEI  120
FPISTFEPAH GTKSFKYRET TGGKDVIGSL VQTDLTMGLA SSSSSSQKSP FLLPLDGREL  180
NKPFQQGPWS RHILPKVPKS VFSQGFDANI GMNSQIRIAR PPVEGRIKNQ LLPRYWPRIT  240
EQELQQISGD SNATVVPLFE KVLSASDAGR IGRLVLPKAC AEAYFPPISQ PEGLPIRIQD  300
VKGKEWLFQF RFWPNNNSRM YVLEGVTPCI QSMQLKAGDT VTFSRMEPEG KLLMGFRKAS  360
VSASVQDSRM GAMHNGVFPS GSSPSLSGVE NLSNMSDYSG LLQSLKRNTD SHLNPLSRSM  420
SLTIGDASWH ANEKQGSKSR ADSFQPDKKR SRNISSKSKR LLIESQDALE LKYTWEELQD  480
MLTPPNTLNP TSVTIEDQDF EEYEEPPVFG KGSIFTARSS GEQEQWAQCD NCSKWRRLPI  540
DFLLPAKWTC QENVWDHMRS ACVAPDELGP RELDHLLRLA KEFHKWRNSM NQKPPPDQDQ  600
GENQNQNQAE PPPDPSVATT TKHPRHRPGC SCIVCSQPPS GKGKHKPNCT CNVCMTVKRR  660
FKTLMLRKQQ RQSEREAEIA EKNNQLKLGP TSNPKEEIEG VMKSQQSSGG GGKSQLDLNI  720
RPHPHVSMMS LLQAANQPLE TYMKQNGLTT LIPEPQGTSS GSQPLPQQQA SSTAQDEQNN  780
QNSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	3e-66	237	366	2	131	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023749906.1	0.0	B3 domain-containing transcription repressor VAL2-like isoform X1
Swissprot	Q6Z3U3	0.0	Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBL	A0A2J6M8X7	0.0	A0A2J6M8X7_LACSA; Uncharacterized protein
STRING	XP_009768196.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	HSI2-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]