PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa018470
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GeBP
Protein Properties Length: 233aa    MW: 25733.9 Da    PI: 10.2397
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58670254PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57383.72.6e-2663157297
     DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                +f+r+w+e Dei +LqGl+d+ +++g s   d+  fy+ +++ +s  ++ksql+eK+rrL+kKf+  +++ ++g ++++ +++d+  ++lsk++W+
  Lsa018470  63 KFHRIWTEPDEIRFLQGLLDC-SSQGLSFPRDLGIFYSRFSHGMSQPYTKSQLSEKLRRLRKKFRVISSRLSKGLDKALLSPQDRALYDLSKQLWE 157
                699******************.788999999****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045048.3E-2864157IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
XPPMAIQQPN PISSIPSSGS KLPIKRKTPT STLILSTPKL ESDDDDADPD PDHDAIARQP  60
PFKFHRIWTE PDEIRFLQGL LDCSSQGLSF PRDLGIFYSR FSHGMSQPYT KSQLSEKLRR  120
LRKKFRVISS RLSKGLDKAL LSPQDRALYD LSKQLWEPDH PFLPSGVSNS DSNPVNNHNC  180
KPNLVGVKVS FSPTLPSTSM AVLALPSVIK ETNNRSNRNR FNNLAAGAAT AGG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023735516.11e-169probable transcription factor At5g28040
TrEMBLA0A2J6KBP01e-166A0A2J6KBP0_LACSA; Uncharacterized protein
STRINGSolyc05g051330.1.14e-62(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.15e-19DNA-binding storekeeper protein-related transcriptional regulator