PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa018525
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 263aa    MW: 30109.1 Da    PI: 8.4787
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S32122906PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.6e-161764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT +Ed ll++ + ++G g W++I+ + g++R++k+c++rw++yl
        Lsa018525 17 KGAWTVQEDTLLKNHIDKHGEGKWHLIPLKAGLNRCGKSCRLRWLNYL 64
                     79********************************************97 PP
2Myb_DNA-binding41.43.4e-1370113146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg + ++E +l+++++k+lG++ W++Ia +++ gRt++++k++w +
        Lsa018525  70 RGDFAQDEVDLILRLHKLLGNR-WALIAGRIP-GRTANDVKNYWDT 113
                      788899****************.*********.***********66 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.3951268IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-221367IPR009057Homeodomain-like
SuperFamilySSF466899.38E-2814111IPR009057Homeodomain-like
SMARTSM007171.6E-131666IPR001005SANT/Myb domain
PfamPF002499.3E-151764IPR001005SANT/Myb domain
CDDcd001672.49E-101964No hitNo description
Gene3DG3DSA:1.10.10.605.8E-2068116IPR009057Homeodomain-like
PROSITE profilePS5129415.34369119IPR017930Myb domain
SMARTSM007172.9E-1269117IPR001005SANT/Myb domain
PfamPF002495.8E-1270114IPR001005SANT/Myb domain
CDDcd001675.71E-975114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
SRNKMRPYSN TGPELRKGAW TVQEDTLLKN HIDKHGEGKW HLIPLKAGLN RCGKSCRLRW  60
LNYLRPNIKR GDFAQDEVDL ILRLHKLLGN RWALIAGRIP GRTANDVKNY WDTHQRSCSK  120
QRKKLPKDDE LLQKSKVPII KPQPRTFSKT LNLGNNPHIK AREGGNLKSC NDDIKNNFNL  180
SSGLNLPSNV LDDNINKYID DLFDDHEIFV TQTNLSSGLN LSFCGSLEKG ETLNVVDQDD  240
DEISFFDFPM DDITMELINS DQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-231311623125MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023766816.10.0transcription factor MYB90-like
SwissprotQ9FNV97e-57MY113_ARATH; Transcription factor MYB113
TrEMBLA0A2J6L7830.0A0A2J6L783_LACSA; Uncharacterized protein
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]