PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa018538
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 886aa    MW: 101112 Da    PI: 5.2139
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58696136PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-1856382PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.38.7e-14853248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
        Lsa018538  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                     78*****************************.************986 PP
2Myb_DNA-binding331.4e-1060103248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
        Lsa018538  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
                      68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.0E-18556IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
CDDcd001671.60E-111053No hitNo description
PfamPF139214.3E-131070No hitNo description
SuperFamilySSF466896.47E-2133107IPR009057Homeodomain-like
CDDcd116596.53E-3055106No hitNo description
Gene3DG3DSA:1.10.10.603.0E-1457104IPR009057Homeodomain-like
PROSITE profilePS5129416.44358107IPR017930Myb domain
SMARTSM007171.7E-1258105IPR001005SANT/Myb domain
PfamPF118313.8E-55401640IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 886 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDNRHR KRKRKGIDYN AEIPFEKRPP PGFYDVADES SIVEQPKFPT  240
TIEELEGERR ADKEARLRKQ DIARNKIAQR QDAPSAILQA NKMNDPETVR KRPKMNLPTP  300
QIPDYELEHI AKFGLPALTD ELSEGSGATR ALLADYTQTP RQTPLRTPQR TPAGKQDAIM  360
MEAENQARLR LSQTPLLGGE NPDLHPSDFS GVTPKKKEIQ TPNPMLTPGA TPGGMGLTPR  420
IGMTPGQSFG VTPKGTPIRD ELHINEEMEM HDNAKIVRRN LRSGLTGLPQ PKNEYQIVIQ  480
PIPEENDEEQ EVKMEEDMSD RIAREKAEED ARQLALLKKR SKVLQRELPR PPGGAVDLIK  540
KSLIRGDEDK SSFVPPTLIE QADEMIRKEL LVLLEHDNVK YPIDEKIEKE KKKGNKRAGG  600
KSVSIPVIEE FDEDELKEAD KMIKEEASFL KVAMGHENED IDEFVEAHKT CINDIMFFPT  660
RNSYGLSSVA GNMEKLAAFQ DEFENVKKRM DDDTRKAQRL EQKIKLLTNG YQMRGGKIWS  720
QVEATFKQMD TAGTEYECFQ ALKRQEQVAS VNRINSIWED VQKQKELEKS LQKRYGDLIV  780
EQERIYHLME NYRKEEAAKQ EITETKMAEA EEVLVEMTKP PLNNDDESAN EPMDVSEPPT  840
PTATVEVDVV APPEDTEKQA SAVDVEVEKN ETNEPENAMV DEIIES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.027853798Cell division cycle 5-like protein
5xjc_L0.027853798Cell division cycle 5-like protein
5yzg_L0.027853798Cell division cycle 5-like protein
5z56_L0.027853798Cell division cycle 5-like protein
5z57_L0.027853798Cell division cycle 5-like protein
5z58_L0.027853798Cell division cycle 5-like protein
6ff4_L0.027853798Cell division cycle 5-like protein
6ff7_L0.027853798Cell division cycle 5-like protein
6icz_L0.027853798Cell division cycle 5-like protein
6id0_L0.027853798Cell division cycle 5-like protein
6id1_L0.027853798Cell division cycle 5-like protein
6qdv_O0.027853798Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185204KRRELKAAGIDNRHRKRKRK
2199204RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023762520.10.0cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A2J6LGI40.0A0A2J6LGI4_LACSA; Uncharacterized protein
STRINGXP_010246794.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]