PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa018582

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

NAC

Protein Properties

Length: 352aa MW: 38890.4 Da PI: 4.5541

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-53181	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	151.2	4.8e-47	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 l pGfrFhPtd+elv++yLk+k+ gk++ + ++++ev+iy++ PwdLp k ++k+++ ew+fF++++kky++g r+nr+t+sg+Wkatgkd++v kg+ Lsa018582 6 LIPGFRFHPTDHELVMYYLKRKLLGKRIIV-NAVAEVNIYEFSPWDLPdKsSLKSGDLEWFFFCPKSKKYSSGARSNRTTESGFWKATGKDRKVEY-KGR 103 579**********************999.88**********96347777888*********************************9.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +v ktLvf+ ++a++g++t+Wvmhey++ Lsa018582 104 VVARIKTLVFHLKTASDGQRTNWVMHEYNM 133 9*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.72E-56	3	156	IPR003441	NAC domain
PROSITE profile	PS51005	52.095	6	156	IPR003441	NAC domain
Pfam	PF02365	4.0E-25	8	132	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MERSSLIPGF RFHPTDHELV MYYLKRKLLG KRIIVNAVAE VNIYEFSPWD LPDKSSLKSG 60 DLEWFFFCPK SKKYSSGARS NRTTESGFWK ATGKDRKVEY KGRVVARIKT LVFHLKTASD 120 GQRTNWVMHE YNMEDQKLAD EGVVQDMYVL CKIFEKEGAG PKNGAQYGAP FNEEEWDDDV 180 ASCSGPTNKP DDKQKGPLTL SLTEPGSSTI TYSANETVIY KQKGPAATIN NKTLPQSTCT 240 LTEPAPSSSA NANANDTPGN DDDVMLYEDL ASIFGVPTGG LNSNNKDKGV EVKGVGPNED 300 EGIFGDLVNL VNLDDFVGAE LNRFETDGSE YTMGMMMGAD DLDVDLGRFC VD

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MERSSLIPGF RFHPTDHELV MYYLKRKLLG KRIIVNAVAE VNIYEFSPWD LPDKSSLKSG  60
DLEWFFFCPK SKKYSSGARS NRTTESGFWK ATGKDRKVEY KGRVVARIKT LVFHLKTASD  120
GQRTNWVMHE YNMEDQKLAD EGVVQDMYVL CKIFEKEGAG PKNGAQYGAP FNEEEWDDDV  180
ASCSGPTNKP DDKQKGPLTL SLTEPGSSTI TYSANETVIY KQKGPAATIN NKTLPQSTCT  240
LTEPAPSSSA NANANDTPGN DDDVMLYEDL ASIFGVPTGG LNSNNKDKGV EVKGVGPNED  300
EGIFGDLVNL VNLDDFVGAE LNRFETDGSE YTMGMMMGAD DLDVDLGRFC VD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-43	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-43	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-43	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-43	1	162	12	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-42	1	162	15	174	NAC domain-containing protein 19
3swm_B	1e-42	1	162	15	174	NAC domain-containing protein 19
3swm_C	1e-42	1	162	15	174	NAC domain-containing protein 19
3swm_D	1e-42	1	162	15	174	NAC domain-containing protein 19
3swp_A	1e-42	1	162	15	174	NAC domain-containing protein 19
3swp_B	1e-42	1	162	15	174	NAC domain-containing protein 19
3swp_C	1e-42	1	162	15	174	NAC domain-containing protein 19
3swp_D	1e-42	1	162	15	174	NAC domain-containing protein 19
4dul_A	7e-43	1	162	12	171	NAC domain-containing protein 19
4dul_B	7e-43	1	162	12	171	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023757610.1	0.0	NAC domain-containing protein 82-like
Refseq	XP_023757611.1	0.0	NAC domain-containing protein 82-like
TrEMBL	A0A2J6LRY0	0.0	A0A2J6LRY0_LACSA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09330.4	4e-85	NAC domain containing protein 82