PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa018647
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family CO-like
Protein Properties Length: 390aa    MW: 43470.2 Da    PI: 6.272
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58685588PU_unrefUnigeneView CDS
PUT-187a-Lactuca_sativa-16127PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box201.4e-063263435
   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHk 35
               r+C+++ + + +++C+ +  +lC  C   +H 
  Lsa018647 32 RVCDTCRSAPCTIYCRPDAAYLCTACDARIHA 63
               79***************************994 PP
2zf-B_box292.3e-0975119341
   zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                 ++C+ +e+ ++ + C+ +   lC +C   +H+       H +vp
  Lsa018647  75 VWVCEACEQAPAAFICKADAASLCTTCDADIHSAnplarrHHRVP 119
                689*****************************6688999977776 PP
3CCT69.31e-23321364144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Lsa018647 321 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRN 364
                9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003360.0592970IPR000315B-box-type zinc finger
PROSITE profilePS501199.842977IPR000315B-box-type zinc finger
CDDcd000214.80E-73277No hitNo description
PROSITE profilePS5011910.90773120IPR000315B-box-type zinc finger
SMARTSM003363.6E-1473120IPR000315B-box-type zinc finger
PfamPF006434.3E-774119IPR000315B-box-type zinc finger
CDDcd000215.41E-876120No hitNo description
PfamPF062037.4E-18321363IPR010402CCT domain
PROSITE profilePS5101716.648321363IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
XGQHEPHNYK PKYRMLDQSS ILCLKSSTTW ARVCDTCRSA PCTIYCRPDA AYLCTACDAR  60
IHAPNKLQSS QHERVWVCEA CEQAPAAFIC KADAASLCTT CDADIHSANP LARRHHRVPV  120
MPIPSALYGP QAADPRTVMG LGVESQSGFL SHDGEDTIDD EDEDEAASWL LFDGLPPPKN  180
SQNQNGKDNG YLFSGEGGDD EYLEFMEFGE DQQQCYKVTE KMYGGGNADS VVPVQKNHHH  240
QEFQSQKFQL GMEYETSNGG GYGYPALTHS VSMSSLEVGV VPDSSRTEAS ISHSRPSKGT  300
IDLFSNSPVQ VLPTQLTPMD REARVLRYRE KKKTRKFEKT IRYASRKAYA ETRPRIKGRF  360
AKRNNGEEDV DQMFLTNHMV EGGYGIVPSF
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023728982.10.0zinc finger protein CONSTANS-LIKE 2
SwissprotQ965021e-118COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A2J6KR760.0A0A2J6KR76_LACSA; Uncharacterized protein
STRINGSolyc02g089540.2.11e-142(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-105CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]