PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa018662
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GeBP
Protein Properties Length: 357aa    MW: 39789.2 Da    PI: 9.3841
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58685114PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-27533PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573107.11.3e-33144240297
     DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskkiWg 97 
                lfqrlwseeDeivl++G+i++ +++gk+p +d+++f+efvk+s++++v++ q++ K++rLK Kf ++v k  ++gk  s+s++h++k++els+k+W+
  Lsa018662 144 LFQRLWSEEDEIVLIKGMISYVETKGKDPIADVNDFHEFVKNSLNVDVNNGQMTAKVKRLKAKFMNNVGKiEQNGKVRSLSNPHEKKMYELSEKLWD 240
                79********************************************************************6778999*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.6E-29145240IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MAQSKLEMNN SSSDDEEVST GVSESELESD MTPPPQPFSR KTQATPQLSS EDTESDADSP  60
RKKFEKADPN IKPLASKPMD DEPSKKPKPK NPISRNSPPP PKPVNGKRKA AEVEDEDTET  120
KITKKEVVAP APSGPENAAE KKPLFQRLWS EEDEIVLIKG MISYVETKGK DPIADVNDFH  180
EFVKNSLNVD VNNGQMTAKV KRLKAKFMNN VGKIEQNGKV RSLSNPHEKK MYELSEKLWD  240
RNSIKNAAIV GCNTKKVNPK PKPDQKLKAN SNHVVSNGGH ESGKKVVLSR GGIKIPITDE  300
DIMNRGLELL SGQKKVELEE KWNDLKVQEL KNYLRKLELM KEQGELVLNA MKKSCAS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023750835.10.0probable transcription factor At2g01370
TrEMBLA0A2J6M7220.0A0A2J6M722_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.18e-24DNA-binding storekeeper protein-related transcriptional regulator