PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa018727
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 222aa    MW: 26027.6 Da    PI: 8.762
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58675723PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.5e-121461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT +Ed +l + +   G  +W+ +++  g+ R++k+c++rw +yl
        Lsa018727 14 RGPWTIDEDHKLMNFILNNGIQCWRVVPKLAGLMRCGKSCRLRWINYL 61
                     89********************************************97 PP
2Myb_DNA-binding544e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+ E++ +++++ +lG++ W++Ia+ ++ gRt++++k++w++
        Lsa018727  67 RGAFTEAEEDMIIQLHSRLGNR-WSKIAAQFP-GRTDNEIKNHWNT 110
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-21564IPR009057Homeodomain-like
PROSITE profilePS5129413.635961IPR017930Myb domain
SuperFamilySSF466895.03E-2811108IPR009057Homeodomain-like
SMARTSM007174.4E-41363IPR001005SANT/Myb domain
PfamPF002497.7E-111461IPR001005SANT/Myb domain
CDDcd001676.58E-41661No hitNo description
PROSITE profilePS5129427.03362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.8E-2765117IPR009057Homeodomain-like
SMARTSM007176.6E-1666114IPR001005SANT/Myb domain
PfamPF002498.6E-1667110IPR001005SANT/Myb domain
CDDcd001676.95E-1169110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGRQPCCEKN GLRRGPWTID EDHKLMNFIL NNGIQCWRVV PKLAGLMRCG KSCRLRWINY  60
LRPDLKRGAF TEAEEDMIIQ LHSRLGNRWS KIAAQFPGRT DNEIKNHWNT RIKKKMKFLG  120
LDHRTHTPIE QHHDTDTTIK RENGESTSSN NIFSNYKIKD EKTNIITDKT STTIEDIGLM  180
MMSHNHQLES LNTSFELELP QNWIDSPGFH WDVFNDPRLG FH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-29121162105MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-29121162105C-Myb DNA-Binding Domain
1msf_C4e-29121162105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023769792.11e-167myb-related protein Pp2-like
SwissprotP800735e-69MYB2_PHYPA; Myb-related protein Pp2
TrEMBLA0A2J6L0R41e-165A0A2J6L0R4_LACSA; Uncharacterized protein
STRINGSolyc05g014290.2.11e-89(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.12e-81myb domain protein 40