PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa018730
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 164aa    MW: 18759.9 Da    PI: 7.7447
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58669309PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.67e-093282954
        AP2 29 krfslgkfgtaeeAakaaiaarkkle 54
               +r++lg+f tae+Aa+a+++a++ + 
  Lsa018730  3 TRIWLGTFETAEDAARAYDEAARLMC 28
               79********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.76137IPR001471AP2/ERF domain
CDDcd000181.89E-19239No hitNo description
Gene3DG3DSA:3.30.730.105.9E-19237IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-12239IPR016177DNA-binding domain
PfamPF008471.1E-4229IPR001471AP2/ERF domain
SMARTSM003801.6E-11243IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
XKTRIWLGTF ETAEDAARAY DEAARLMCGP RARTNFPYNP SLSQSSSSKL LSATLTAKLH  60
RCYMASLQMS KPSIQQQQQK MMNQKQMGST HIGESSPETK PTMVMQHQQP AMEHNSVLQF  120
HSQHHQHQQQ QFFATLEDHH IEQMIEELLH YGSIELCSIG QSQK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023747048.11e-118ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW59e-52ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A2J6JLV41e-116A0A2J6JLV4_LACSA; Uncharacterized protein
STRINGXP_008220701.17e-63(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.11e-25ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]