PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa018813
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 301aa    MW: 34317.3 Da    PI: 9.2922
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58675906PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73.1e-1462104648
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +eEdell+++++ +G g+W++ +++ g+ R++k+c++rw +yl
        Lsa018813  62 PEEDELLINYIQTHGEGQWRALPSKAGLLRCGKSCRLRWMNYL 104
                      7**************************99************97 PP
2Myb_DNA-binding48.81.6e-15110154147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T +E + +v+++ ++G++ W++Ia ++  gRt++++k++w+ +
        Lsa018813 110 RGNFTSDENDVIVRLHSLHGNR-WSLIATELH-GRTDNEIKNHWNAH 154
                      89********************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.1E-756106IPR001005SANT/Myb domain
CDDcd001672.29E-862104No hitNo description
SuperFamilySSF466892.78E-2562151IPR009057Homeodomain-like
PfamPF002491.7E-1262104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2062111IPR009057Homeodomain-like
PROSITE profilePS500908.9263104IPR017877Myb-like domain
PROSITE profilePS5129423.884105159IPR017930Myb domain
SMARTSM007172.0E-13109157IPR001005SANT/Myb domain
PfamPF002493.5E-13110155IPR001005SANT/Myb domain
CDDcd001671.49E-8112155No hitNo description
Gene3DG3DSA:1.10.10.603.4E-24112158IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
XKRAFKRPRN GCIVLRLTAF NSHRVISLSV FTFISAACHN HRKWEEHLAV QRSVCTEVHG  60
PPEEDELLIN YIQTHGEGQW RALPSKAGLL RCGKSCRLRW MNYLRPGIKR GNFTSDENDV  120
IVRLHSLHGN RWSLIATELH GRTDNEIKNH WNAHLRKTVE NAGHHHPKLS KNKKKVKKMR  180
KSADRKAETT NQGKSKKVKL DRSPSSTSSS SSVSLSKNES SDNGMMSGAS SSCTIDLGDV  240
DFDFSWSNWT PLLEVEGTST MDCQQDEDFL MDGCDLFMSK ADEKLMLEKL YHEYLNLLNQ  300
X
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-21581606109B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023742384.11e-176transcription repressor MYB6-like
TrEMBLA0A2J6JWP41e-174A0A2J6JWP4_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.14e-48myb domain protein 5