PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa018822
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 631aa    MW: 72241.6 Da    PI: 9.1064
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58694757PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-41319PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-07461502240
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      ++W +eE ell +++ ++++g   +W+ +a+++g+gR+ +++
        Lsa018822 461 KPWGKEEIELLRKGIVKYPKGtsrRWEVVAEYIGTGRSVEEI 502
                      69***********************************99876 PP
2Myb_DNA-binding28.82.9e-09576619344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                       WT+  +  lv+a k ++++   +W+++a+ ++ g+t +qck  +
        Lsa018822 576 VWTPVQETALVQALKTFPKEinqRWERVAAAVP-GKTVNQCKKQF 619
                      7********************************.********876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1101.9E-2094200IPR001623DnaJ domain
SuperFamilySSF465651.57E-1996176IPR001623DnaJ domain
SMARTSM002711.9E-1497172IPR001623DnaJ domain
PfamPF002262.7E-1798177IPR001623DnaJ domain
CDDcd062571.43E-1298169IPR001623DnaJ domain
PROSITE profilePS5007618.28898180IPR001623DnaJ domain
PRINTSPR006251.2E-7103121IPR001623DnaJ domain
PRINTSPR006251.2E-7121136IPR001623DnaJ domain
PRINTSPR006251.2E-7152172IPR001623DnaJ domain
PROSITE patternPS006360157176IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.602.6E-4457502IPR009057Homeodomain-like
PROSITE profilePS512936.908458513IPR017884SANT domain
SMARTSM007172.6E-6459512IPR001005SANT/Myb domain
SuperFamilySSF466895.46E-7459503IPR009057Homeodomain-like
PfamPF002492.5E-6461502IPR001005SANT/Myb domain
CDDcd001671.49E-4462502No hitNo description
PROSITE profilePS512938.924572627IPR017884SANT domain
SMARTSM007177.5E-8573625IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-5575619IPR009057Homeodomain-like
SuperFamilySSF466893.59E-9575629IPR009057Homeodomain-like
PfamPF002491.8E-7576619IPR001005SANT/Myb domain
CDDcd001673.93E-6577623No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MTPKSTIRLI TYSNELINGD PLYISSNSLP IKASNYEPAG HSFHDIALKL RGYFEEENIT  60
SDNETLPKDK EHDYMQSSDS YSSSKGKKKT ADGVIQQDHY ALLGLGHLRY LATEEQIRKS  120
YRETALKHHP DKQAALLLGE ETEAGKQAKK DEIENRFKAI QEAYEVLIDS TRRRIYDSTD  180
EFDDEIPTDC SPNDFFKVFG PAFMRNGRWS VVQPIPPLGD DTMPLKEVDS FYDFWYGFKS  240
WREFPHDEEF DLEQAESRDH KRWMERQNAK LSEKARKEEH ARIRSLVDNA YKRDPRIMRR  300
KETLKLEKQK KKEAKFIVKK QQEEEAAKVA EENRKKKEEE DKQAAEAASN QKKIKEKEKK  360
LLRKERTRLR TISSPVVSEN ILNLSSDDVE SICMKLDMLQ LKKLCDDFEG QDGNNKKAEL  420
LKSALSVGDQ QSEKEKDSVV KKNQVNGSIK VNGSLAQKKE KPWGKEEIEL LRKGIVKYPK  480
GTSRRWEVVA EYIGTGRSVE EILKATKTVL LQKPDSAKAF DSFLEKRKPA VSIASPLTTR  540
EEVDGVSVSV SVGPTESQPQ PSQSEEAGSS GSDQDVWTPV QETALVQALK TFPKEINQRW  600
ERVAAAVPGK TVNQCKKQFA LLKEKFRNKK K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A4e-1719429720123Zuotin
5dje_B4e-1719429720123Zuotin
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023760135.10.0dnaJ homolog subfamily C member 2-like
TrEMBLA0A2J6LM900.0A0A2J6LM90_LACSA; Uncharacterized protein
STRINGXP_010067661.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain